PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013639300.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 437aa MW: 47543.7 Da PI: 6.6378

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013639300.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.5	1.8e-06	332	366	15	54
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ ++++ L++l+ + +K + a++L +A+eYIk L XP_013639300.1 332 KMSDRIAALQQLVSPF-----GKTDQASVLSEAIEYIKFL 366 899*********98.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.144	317	366	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-4	326	372	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.26E-6	327	371	No hit	No description
SuperFamily	SSF47459	3.53E-11	330	382	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.0E-11	331	375	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence Send to blast
MGDHHDFINS GSWWKVSSSS SISSSSSMRA NSIESGGSAA FHDKLHHSLA TDHHLQMIGL 60 GLSSQSHVDQ WNQSLLRGDS KAETSFGVML QENINLDATS NANANTTSYQ LQESDPSHHQ 120 ALWRDPRINN SDFKPQLNMT SSNNRGFFLD HQFSPHGSSS TDSSTVTCQG FSSDNPSNTL 180 YGPTATTPNS SSAMFHHHHH HQAAGFNMPG SSDQQPSRTH QASNLGYSQF GSSTGNYDQT 240 ALRFSNNATF WNPTAAGNVG PTHHDASSNY FPALQPPQIH APSFDEQPNG MSEIKDSSSS 300 EVKRVGGDQP AAKRAKSEAT SPSPPLKVKK EKMSDRIAAL QQLVSPFGKT DQASVLSEAI 360 EYIKFLHQQV SALSNPYMNS GASLQHQQSD HPKELEVSKE PDLRSQGLCL VPVSSTFPVT 420 HDTTVDFWTT TFGGTFR

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence Send to blast

MGDHHDFINS GSWWKVSSSS SISSSSSMRA NSIESGGSAA FHDKLHHSLA TDHHLQMIGL  60
GLSSQSHVDQ WNQSLLRGDS KAETSFGVML QENINLDATS NANANTTSYQ LQESDPSHHQ  120
ALWRDPRINN SDFKPQLNMT SSNNRGFFLD HQFSPHGSSS TDSSTVTCQG FSSDNPSNTL  180
YGPTATTPNS SSAMFHHHHH HQAAGFNMPG SSDQQPSRTH QASNLGYSQF GSSTGNYDQT  240
ALRFSNNATF WNPTAAGNVG PTHHDASSNY FPALQPPQIH APSFDEQPNG MSEIKDSSSS  300
EVKRVGGDQP AAKRAKSEAT SPSPPLKVKK EKMSDRIAAL QQLVSPFGKT DQASVLSEAI  360
EYIKFLHQQV SALSNPYMNS GASLQHQQSD HPKELEVSKE PDLRSQGLCL VPVSSTFPVT  420
HDTTVDFWTT TFGGTFR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013639300.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK118054	0.0	AK118054.1 Arabidopsis thaliana At3g20640 mRNA for putative bHLH transcription factor (bHLH123), complete cds, clone: RAFL19-30-D14.
GenBank	BT008580	0.0	BT008580.1 Arabidopsis thaliana clone U50947 unknown protein (At3g20640) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013639300.1	0.0	PREDICTED: transcription factor bHLH123-like isoform X1
Refseq	XP_013639692.1	0.0	PREDICTED: transcription factor bHLH123-like isoform X1
Swissprot	Q8GXT3	0.0	BH123_ARATH; Transcription factor bHLH123
TrEMBL	A0A078HX79	0.0	A0A078HX79_BRANA; BnaCnng10760D protein
TrEMBL	A0A0D3AC19	0.0	A0A0D3AC19_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6FXX3	0.0	A0A3P6FXX3_BRAOL; Uncharacterized protein
STRING	Bo1g108770.1	0.0	(Brassica oleracea)
STRING	Bo1g108780.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4024	25	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]