PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013639567.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 217aa    MW: 24209.5 Da    PI: 8.3246
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013639567.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.1e-094493253
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIks 53
                    +  h  +Er+RR+++ + f+ Lr++lP       ++K   ++ +  Av++Ik+
  XP_013639567.1 44 KLLHRDIERQRRQEMATLFASLRSHLPLqY---IKGKRAVSDHVNGAVNFIKD 93
                    6679************************66...9999999***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-1239114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.6554294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-744112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-74493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.81E-74793No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MDPYQNPSPK GYQRQRPFGS AGEGGSSGGS DIPREIDDNK KKKKLLHRDI ERQRRQEMAT  60
LFASLRSHLP LQYIKGKRAV SDHVNGAVNF IKDTETRIKE LSARRDELSR ETCHTYKSSP  120
DPARTGSELG KSYPASVMVQ PCVSGFEVAV SSNSSGPEAL PLSRVLETLQ ELGLEVISCL  180
TTRVNERLMH TIQVEVNSFG CLDLAWLQQK LVEELIL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013639567.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013639567.11e-161PREDICTED: transcription factor bHLH126-like isoform X1
SwissprotQ9STJ61e-118BH126_ARATH; Transcription factor bHLH126
TrEMBLA0A0D3A6A21e-159A0A0D3A6A2_BRAOL; Uncharacterized protein
STRINGBo1g040100.11e-160(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29682767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.11e-120bHLH family protein