PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013639574.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 201aa    MW: 22452.4 Da    PI: 9.6044
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013639574.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.99.9e-104493253
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIks 53
                    +  h  +Er+RR+++ + f+ Lr++lP       ++K   ++ +  Av++Ik+
  XP_013639574.1 44 KLLHRDIERQRRQEMATLFASLRSHLPLqY---IKGKRAVSDHVNGAVNFIKD 93
                    6679************************66...9999999***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-1239114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.6554294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-744112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-74493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.88E-74793No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MDPYQNPSPK GYQRQRPFGS AGEGGSSGGS DIPREIDDNK KKKKLLHRDI ERQRRQEMAT  60
LFASLRSHLP LQYIKGKRAV SDHVNGAVNF IKDTETRIKE LSARRDELSR ETCHTYKSSP  120
DPARTGSELG KSYPASVMVQ PCVSGFEVAV SSNSSGPEAL PLSRVLETLQ ELGLEVISCL  180
TTRVNERLMH TIQVEKYLKH S
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013639574.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013639574.11e-148PREDICTED: transcription factor bHLH126-like isoform X2
SwissprotQ9STJ61e-101BH126_ARATH; Transcription factor bHLH126
TrEMBLA0A0D3A6A21e-142A0A0D3A6A2_BRAOL; Uncharacterized protein
STRINGBo1g040100.11e-142(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.11e-104bHLH family protein