PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013639731.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 309aa    MW: 35105.8 Da    PI: 8.6776
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013639731.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.11e-051752111455
                     HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++ +++  L +++P+      kK+s a++Le++ +YI  Lq
  XP_013639731.1 175 RKVSDRIRSLEKIMPWE-----KKMSLATTLEETNKYITFLQ 211
                     6889************9.....8****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.55161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-4176217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-6176218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MESCYEFASL SELPPLPQAY APMEEYYPYD IAPLESLPPF PHSDFAPHGG LIPFSDTHQD  60
YLQLQKQQHC AESMFTDSSL PLVTRDYLTE STRFENLFSH DVPFLHLPDL KFVEGARSPP  120
PCLSLAPPPP LPVARHNVNL RQRHVGSRVN NTFSISPSSS SKSKPPASQY VHGTRKVSDR  180
IRSLEKIMPW EKKMSLATTL EETNKYITFL QSQIASLRWM PLDSVYPKKK KKKFYRRQPQ  240
NAAFGRGVRR SFLRQRNEQE LTQNVDVAAA AGTCGNQTNS PLKKFPRDDL AVLDVDHCSV  300
DRDIHHNSG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013639731.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1553481e-60AC155348.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' chromosome Cytogenetic chromosome 1 clone KBrH097M21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013639731.10.0PREDICTED: transcription factor bHLH117-like
TrEMBLA0A0D3CHD21e-141A0A0D3CHD2_BRAOL; Uncharacterized protein
STRINGBo5g098430.11e-142(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133992228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22100.12e-34bHLH family protein