PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013890825.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family C2H2
Protein Properties Length: 335aa    MW: 35274.4 Da    PI: 5.6682
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013890825.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.000455373323
                    ETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2  3 CpdCgksFsrksnLkrHirt.H 23
                    C++Cgk +  +++L++H+r  +
  XP_013890825.1 53 CTYCGKKY-LPDSLRVHLRFfC 73
                    ********.*********9766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MFCTRRPLVA VYHGAKRGAT CRADLEGADV VLTTYSTIEA DFRRTMMPPK IACTYCGKKY  60
LPDSLRVHLR FFCGPFAQKS DALAKQQRKR DRREAGGGAA AEEEEEEDEE AGSEEGEDDM  120
DDEGGDGPSK GRAASKARGR STAAPARGGG GSSKGGGSSK GGGSKGRGSE ASAPSPVGKS  180
KQQQQQQQQP KQRRRRRSFS NAGSDDEGDE DFAPGAEEEE EEDDESSSDG SGMSDLEDED  240
EEEAPARPSS SKRSKVNGGG ASKGKQAAGK GEAESEGAGG KGGKGGKGKG GWKGGKGGRR  300
PMMSMFRMKK EMAEGAKEHD AAWWAAEKMI SAAEV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18692QRKRDRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013890825.10.0hypothetical protein MNEG_16158, partial
TrEMBLA0A0D2M8M90.0A0A0D2M8M9_9CHLO; Uncharacterized protein (Fragment)
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]