PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013891872.1

Organism

Monoraphidium neglectum

Taxonomic ID

145388

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium

Family

Nin-like

Protein Properties

Length: 375aa MW: 37949 Da PI: 4.209

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013891872.1	genome	BU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	28	4.3e-09	1	21	31	51
RWP-RK 31 vLKriCRqyGIkRWPhRkiks 51 +LK CR++GI+RWP+Rk +s XP_013891872.1 1 MLKHYCRKFGIPRWPFRKRQS 21 69****************777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	10.717	1	42	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MLKHYCRKFG IPRWPFRKRQ SIGILISSIE DFSRNRPVNV EPALAKLRSF LDLIDEDPNI 60 DLDGPIKRLR QAFFKEAYKS RQRATKGEGG DRSTRAQRNQ QRTDQWLEQL CHAIVAEQVG 120 NEAPAGIDYG AIEAAAAAAE AGLTGEDAAA AAAAAMANAQ MLQALADGQG GAAALTINAD 180 GTVSGLPGGG LVFTQEQLQQ LQQLQQLQGV DTGGAALSAA QPLQLPVGPD GEPINITNPD 240 GTVDELQLQQ IMLMQQQLQL QALQALQAQL ASAEAEAEAE AGGVAADGGE EAAAAAAAAV 300 AAAAAAAAGD EGGVGAAAAA GDAAGHELSG AAVFDAEAMA AVADAAAAHA PPGDDHHEAG 360 GVSAAAAVGD GGEGH

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MLKHYCRKFG IPRWPFRKRQ SIGILISSIE DFSRNRPVNV EPALAKLRSF LDLIDEDPNI  60
DLDGPIKRLR QAFFKEAYKS RQRATKGEGG DRSTRAQRNQ QRTDQWLEQL CHAIVAEQVG  120
NEAPAGIDYG AIEAAAAAAE AGLTGEDAAA AAAAAMANAQ MLQALADGQG GAAALTINAD  180
GTVSGLPGGG LVFTQEQLQQ LQQLQQLQGV DTGGAALSAA QPLQLPVGPD GEPINITNPD  240
GTVDELQLQQ IMLMQQQLQL QALQALQAQL ASAEAEAEAE AGGVAADGGE EAAAAAAAAV  300
AAAAAAAAGD EGGVGAAAAA GDAAGHELSG AAVFDAEAMA AVADAAAAHA PPGDDHHEAG  360
GVSAAAAVGD GGEGH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013891872.1	0.0	hypothetical protein MNEG_15112
TrEMBL	A0A0D2IY35	0.0	A0A0D2IY35_9CHLO; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP84	16	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	1e-11	RWP-RK domain-containing protein

Link Out ? help Back to Top
Entrez Gene	25732741

Publications ? help Back to Top
Bogen C, et al. Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics, 2013. 14: p. 926 [PMID:24373495]