PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013892094.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family ERF
Protein Properties Length: 261aa    MW: 25868.3 Da    PI: 11.461
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013892094.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.4e-20132182155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     ++++GVr+++ +g+++AeIrdp+    +  r +lg+f+taeeAa+a+++a+++++g
  XP_013892094.1 132 CKFRGVRQRP-WGKFAAEIRDPR----CgSRLWLGTFDTAEEAARAYDRAALEIRG 182
                     79********.**********82....68************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.67E-27132186No hitNo description
PfamPF008474.3E-14132182IPR001471AP2/ERF domain
PROSITE profilePS5103221.667133201IPR001471AP2/ERF domain
SMARTSM003807.1E-31133196IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-27133185IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-19133185IPR016177DNA-binding domain
PRINTSPR003674.4E-11134145IPR001471AP2/ERF domain
PRINTSPR003674.4E-11156172IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MGAPPPTHPT PAAPVACALR GAGKRQPVPS AKALAAAGVL GTSPSDSHLS ASCPGLQAFP  60
IGSWGAPGSV PGFGGLNASP SPSPSSHLLG SSPGVKSHMR PRSKLSSSVG AAERLKLSAG  120
GGAGGLSKNG ACKFRGVRQR PWGKFAAEIR DPRCGSRLWL GTFDTAEEAA RAYDRAALEI  180
RGDKAVGGRG RTVTRGRMNH AKGLAVAAGH AAAATARAVG AAAPDCCHSG AGPRDSACSC  240
ATRGSPAPSP LRSLQASPLP A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-20134186659ATERF1
3gcc_A2e-20134186659ATERF1
5wx9_A3e-201331861468Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013892094.11e-180hypothetical protein MNEG_14889
TrEMBLA0A0D2LMQ61e-179A0A0D2LMQ6_9CHLO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1321540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.12e-15ethylene-responsive element binding protein
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]