PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013892114.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family MYB_related
Protein Properties Length: 305aa    MW: 30998.5 Da    PI: 8.0245
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013892114.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.71.1e-172569147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT++E+ ++v+a++++G   Wk+I +++g ++t+ q++s+ qk+
   XP_013892114.1 25 REKWTADEHARFVEAIRLHGRS-WKKIEEHIG-TKTAVQVRSHAQKF 69
                     789*****************55.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.29E-161975IPR009057Homeodomain-like
PROSITE profilePS5129421.2492074IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.2E-92273IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-152372IPR006447Myb domain, plants
SMARTSM007175.0E-132472IPR001005SANT/Myb domain
PfamPF002491.2E-142568IPR001005SANT/Myb domain
CDDcd001672.14E-102770No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0032922Biological Processcircadian regulation of gene expression
GO:0042754Biological Processnegative regulation of circadian rhythm
GO:0043433Biological Processnegative regulation of sequence-specific DNA binding transcription factor activity
GO:0043966Biological Processhistone H3 acetylation
GO:0046686Biological Processresponse to cadmium ion
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MQQQAAFDGG GGVRVRKPYT ITKAREKWTA DEHARFVEAI RLHGRSWKKI EEHIGTKTAV  60
QVRSHAQKFF NKIEKNKEQG GRAAHGDDVA IPPPRPKRRP QRPYPRKDPD SLTATATTAG  120
LSNASLDAPS LPSPPPQANH PAGEGASAGA DADAPAALLA LGAAGAQQQL ARAIAGGPGL  180
AAAAGAGVGA PGLASAELDE QLAASGVTDA TVAAVAAAAS AAAAAAAAAV VSAAGAQFQA  240
FLEANPQTAY HYFGVLPGAL GFPPPPPPPQ QQQQQQHHPA AATAPFGAPA QPRGPVEAMD  300
ESEET
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00119DAPTransfer from AT1G01060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013892114.10.0hypothetical protein MNEG_14869, partial
TrEMBLA0A0D2LMS70.0A0A0D2LMS7_9CHLO; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP4541427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46830.11e-29circadian clock associated 1
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]