PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013892244.1

Organism

Monoraphidium neglectum

Taxonomic ID

145388

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium

Family

Nin-like

Protein Properties

Length: 430aa MW: 42709.6 Da PI: 8.0298

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013892244.1	genome	BU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	76.3	3.7e-24	18	67	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++++edl+++F l +k+AA +Lg+c+T+LKr+CR++GI RWP+R+i++l XP_013892244.1 18 RRLTFEDLQSQFGLGLKEAAANLGICATTLKRACRRNGITRWPRRQIAKL 67 589********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.153	2	87	IPR003035	RWP-RK domain
Pfam	PF02042	1.3E-20	20	67	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006107	Biological Process	oxaloacetate metabolic process
GO:0006108	Biological Process	malate metabolic process
GO:0050152	Molecular Function	omega-amidase activity

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MGGAGGKAPP RHQLGAGRRL TFEDLQSQFG LGLKEAAANL GICATTLKRA CRRNGITRWP 60 RRQIAKLSRA LQQGAGAAPP AGMVERAVSS TGLTQQQMAS SVAVSGAAAA AAAPGPGRVG 120 SGSAPIPIGA GGGGGGMHGA PAGTVFIGPN GIPMMFAGSA PGGAVFAAHQ QQLGASYGAA 180 GASSYPPQAL AAVPDGSGGY VLAPAAHGAQ QVLYHSGSGG SYGALSAVAS AQDAASAGGG 240 GSGGGMVMHS APQYVMAHVM HPNGQGGHMG GHHMGGHHVV MLNAQMPPAF AVQAPHGAQQ 300 QMFVTHSLPD HQQQHQQHQQ QHQQHQQHQQ HQQHPQQQHS GQLPHAGHGG AEAMQDAAAF 360 LDLIDGEDDL MIPSGGLEAQ IGEMMAAAAA AAANGGTTGR PGAPGDVAAS ALAAAAAQRQ 420 QPAHLAGVWD

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MGGAGGKAPP RHQLGAGRRL TFEDLQSQFG LGLKEAAANL GICATTLKRA CRRNGITRWP  60
RRQIAKLSRA LQQGAGAAPP AGMVERAVSS TGLTQQQMAS SVAVSGAAAA AAAPGPGRVG  120
SGSAPIPIGA GGGGGGMHGA PAGTVFIGPN GIPMMFAGSA PGGAVFAAHQ QQLGASYGAA  180
GASSYPPQAL AAVPDGSGGY VLAPAAHGAQ QVLYHSGSGG SYGALSAVAS AQDAASAGGG  240
GSGGGMVMHS APQYVMAHVM HPNGQGGHMG GHHMGGHHVV MLNAQMPPAF AVQAPHGAQQ  300
QMFVTHSLPD HQQQHQQHQQ QHQQHQQHQQ HQQHPQQQHS GQLPHAGHGG AEAMQDAAAF  360
LDLIDGEDDL MIPSGGLEAQ IGEMMAAAAA AAANGGTTGR PGAPGDVAAS ALAAAAAQRQ  420
QPAHLAGVWD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013892244.1	0.0	hypothetical protein MNEG_14739
TrEMBL	A0A0D2LN53	0.0	A0A0D2LN53_9CHLO; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP3760	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38340.1	7e-14	Nin-like family protein

Link Out ? help Back to Top
Entrez Gene	25732330

Publications ? help Back to Top
Bogen C, et al. Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics, 2013. 14: p. 926 [PMID:24373495]