PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013892512.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family ERF
Protein Properties Length: 507aa    MW: 51713.9 Da    PI: 7.1359
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013892512.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2254.7e-08133182155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                     sg+ GV+w k+++rW A  r       +  k f+  ++ taeeAa+a + a+++ +g
  XP_013892512.1 133 SGFFGVSWSKNKQRWDACFRA------CdvKLFR-RNYHTAEEAARAWDLAALAVRG 182
                     5777**************888......6679999.99***************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF544953.57E-14149IPR016135Ubiquitin-conjugating enzyme/RWD-like
PfamPF086949.2E-25149IPR014806Ubiquitin-fold modifier-conjugating enzyme 1
SuperFamilySSF541717.85E-10133190IPR016177DNA-binding domain
PROSITE profilePS5103211.93134190IPR001471AP2/ERF domain
SMARTSM003800.0011134196IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.4E-9143191IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MYRGGKICLT IHFKPLWAKN SPHFGFAHAL CLGLAPWLAA EVPYLVEAAA AGDDTDDEDY  60
APPQRAAGRT SDGGAGRVPR PQGAAAPPSA PAAAHAAARG GGRAGAAIGS RLLSQRALAP  120
KAAGGPSAPA GASGFFGVSW SKNKQRWDAC FRACDVKLFR RNYHTAEEAA RAWDLAALAV  180
RGPEARTNFP SADYTDAEVA AMEDHIRERH PAFPLEKVKM AYRTCPSSNH HNMAPLPAAV  240
QQLLAASATS ARASSSDSRG DSAADSGNRG GADSDAEAWP EGAGDGGGAP GAAARAGGGG  300
EGGEAFGGEE PGVVPAGNSS HLPDRNGVDS GVAAPLPTGI SAHAAPPSGP GIVEQVPALE  360
SQGQQQEQEQ EQQPQPQSEQ QEQPEQLKGQ QREQGQQIAQ RATLELVQQQ LLLLQQAAAQ  420
LAGSRGAQWA LQQQARVEPA SGSASPARKR RSGPRTGASS GGAAASAAAA SAGTGAAAPP  480
APPQWAGDRP GQSSLFNGVC HKNGSRI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2k07_A3e-17147109155Ufm1-conjugating enzyme 1
2z6o_A3e-17147114160Ufm1-conjugating enzyme 1
2z6p_A3e-17147114160Ufm1-conjugating enzyme 1
3evx_A3e-17147109155Ufm1-conjugating enzyme 1
3evx_B3e-17147109155Ufm1-conjugating enzyme 1
3evx_C3e-17147109155Ufm1-conjugating enzyme 1
3evx_D3e-17147109155Ufm1-conjugating enzyme 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013892512.10.0ufm1-conjugating enzyme 1
TrEMBLA0A0D2J0800.0A0A0D2J080_9CHLO; Ufm1-conjugating enzyme 1
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]