PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013892648.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family C3H
Protein Properties Length: 75aa    MW: 8592.9 Da    PI: 8.2149
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013892648.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.21.3e-08629226
                    -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                    k  +C +f + G C +Gd+Ck++H+
  XP_013892648.1  6 KVQICYDFTK-GMCTRGDKCKYSHD 29
                    7789******.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.5E-5430IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.892431IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-7529IPR000571Zinc finger, CCCH-type
PfamPF161315.4E-7635IPR032297Torus domain
Gene3DG3DSA:4.10.1000.101.4E-6629IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.0283865IPR000571Zinc finger, CCCH-type
SMARTSM003560.293964IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 75 aa     Download sequence    Send to blast
MGADGKVQIC YDFTKGMCTR GDKCKYSHDI ATIVHFNSRE KGICFDYLRN QCHRGLLCRF  60
SHDLSNIAQQ CQLVC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013892648.19e-50putative zinc finger protein
RefseqXP_013900780.12e-44putative zinc finger protein
TrEMBLA0A0D2KCU42e-48A0A0D2KCU4_9CHLO; Putative zinc finger protein
TrEMBLA0A0D2N7D95e-43A0A0D2N7D9_9CHLO; Putative zinc finger protein
STRINGXP_002946451.12e-42(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP35071314