PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013895141.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family C3H
Protein Properties Length: 561aa    MW: 58652.7 Da    PI: 8.971
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013895141.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.13.1e-08525626
                    -SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  6 CrffartGtCkyGdrCkFaHg 26
                    C +f+rtG C+ G+ C+F H+
  XP_013895141.1  5 CLTFLRTGGCQLGAACQFQHP 25
                    99******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.8E-4425IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.573427IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-6525IPR000571Zinc finger, CCCH-type
SuperFamilySSF562196.67E-21266385IPR005135Endonuclease/exonuclease/phosphatase
PfamPF033721.1E-12270544IPR005135Endonuclease/exonuclease/phosphatase
Gene3DG3DSA:3.60.10.105.2E-7316381IPR005135Endonuclease/exonuclease/phosphatase
Gene3DG3DSA:3.60.10.105.2E-7449539IPR005135Endonuclease/exonuclease/phosphatase
SuperFamilySSF562196.67E-21450547IPR005135Endonuclease/exonuclease/phosphatase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MAGVCLTFLR TGGCQLGAAC QFQHPAGLRE SYAAGRRSAQ TAAAGAVGAA LAGLPAAAGT  60
GVQAAAAASM QAWQANHQLG QQPWAQHTQS VVLTRPKAGV WPPLPPLPFA GAPVQSQGLP  120
SSWKPQQPQQ QQQQQQQQQQ QQQQQQLVQA QQQGQKQQQQ QQQEQEQQQV ARAAPPTTPD  180
LQCAPISLGT RWPSQMQGAG QGWGAQQHGQ DPVSGGNRPA GGDGGGGGGG GGGGARRRPS  240
SVNLSRHWMA SKEAPAADGG AGDGVRLRVM SYNLLADALG PIIDGYGGPQ AHEHARELYP  300
SCSPRDLEWG PRWALMLQEI EALSPDVLCL QEVDRWGEVQ AALRALGYEG TYVQRTGDRP  360
DGCATFWRAS LLEARALESL RFQASAAAEA AQQRRHAPLG LPARDFGLRD NVAALALLAV  420
KPRDQPTAAA PANGGGGGRR SPTKRRRVSS PGTDALAAGA APPLVAVANT HVLFNPKRGD  480
IKLGQLRLLA AALARLARAG GAADGGGGGD DGGCEARHEP AAAPVALLLM GDLNLAPHSP  540
VYEFVARGEL DCMMHQRRDL S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1443447KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013895141.10.0putative Carbon catabolite repressor protein 4, partial
TrEMBLA0A0D2M4D40.0A0A0D2M4D4_9CHLO; Putative Carbon catabolite repressor protein 4 (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP88233
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]