PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013895179.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family bHLH
Protein Properties Length: 636aa    MW: 62123.9 Da    PI: 6.1668
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013895179.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.85.2e-10379431455
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +h+ +E++RRdr+N  ++ L  l+P+ + + ++ +  K  iL  A+  ++sLq
  XP_013895179.1 379 SHSTIEKQRRDRLNALLDDLGALVPPsDGRSDGSRRPKHVILSDAIALLNSLQ 431
                     7*************************777889999****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-11375447IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.506375430IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.23E-9378435No hitNo description
Gene3DG3DSA:4.10.280.103.7E-11379434IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-7379431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-9381436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550215.95E-5542584No hitNo description
Gene3DG3DSA:3.30.70.2603.0E-4546587No hitNo description
PROSITE profilePS516719.644546623IPR002912ACT domain
CDDcd048731.44E-5547582No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
MAALHDVDHM GMTDQELEDF LSFMDHPPGG VLNGGPLAAF AAVEATELSD DGGNTACTNG  60
AAPASSSDAH GSSEQHDSHM AVDREAQKSP GSSEDCTGAA GGAGRGAGGD PAAARGAMPQ  120
PYGLGGHLMG LGRLPEGEAF PPAAGLGEAA AAVDRAPALL AAAPAAAMPV PVPTRGGASG  180
YSGGSAPSML RVQSAASLGS LTMPLESLAL NSPAVMGPLG ADAAAAAHSA GQPMMMVSAS  240
SLPAGYGHHA GAFHQHGGGP VQMLSMGAFG SGGLAFVPAA ALAACGSAPP GVHNGGATLA  300
STLQNCGSDP LLSTSWPSSA PSGGGAASSA PSLQRQRSSG APKPPSSGRS GASARGRSAA  360
TAAADATYHR SSGNGGTLSH STIEKQRRDR LNALLDDLGA LVPPSDGRSD GSRRPKHVIL  420
SDAIALLNSL QERVRVGGDE VAALKQRLAA AEAVAGAGAH AASIDIAGAA AAPCGAGAAL  480
KAEPGSSVEQ QMLPPTPSGT SPAELAASML RRGSSDAELS HMQQQQQQPS AAQQQVVVEQ  540
EGDCVRVAVS CHDRDGLLSD LVAAIRGTGA KIAKASITTT GDGAARDEIE LRLEGGGGGA  600
GAGAGVTLDS VRHAVVSVLG GTSAAAAGAR GKRTRQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013895179.10.0hypothetical protein MNEG_11802
TrEMBLA0A0D2LXP00.0A0A0D2LXP0_9CHLO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP34551013
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]