PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

XP_013895410.1

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium

Family

Protein Properties

Length: 80aa MW: 8830.55 Da PI: 10.8224

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013895410.1	genome	BU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	43	9.2e-14	22	78	12	68
S1FA 12 nPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavP 68 nP +l v ll+vf+ +n l+ +aqkn P + kk v k++kre l++G+a+P XP_013895410.1 22 NPVPTILATVLVLLVVFIGANVGLWWWAQKNAPAKPKKKVGAKQMKRETLRRGLAMP 78 6777788888899999999***********************************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04689	1.6E-11	22	78	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 80 aa Download sequence Send to blast
MPTHFPPLYS DIADLAGKDL PNPVPTILAT VLVLLVVFIG ANVGLWWWAQ KNAPAKPKKK 60 VGAKQMKRET LRRGLAMPQD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013895410.1	7e-52	hypothetical protein MNEG_11574
TrEMBL	A0A0D2MNV5	2e-50	A0A0D2MNV5_9CHLO; Uncharacterized protein

Link Out ? help Back to Top
Entrez Gene	25728850

Publications ? help Back to Top
Bogen C, et al. Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics, 2013. 14: p. 926 [PMID:24373495]