PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013895546.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family NF-YB
Protein Properties Length: 210aa    MW: 21043.5 Da    PI: 4.0649
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013895546.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB51.91.9e-16398596
           NF-YB  5 drflPianvsrimkkvlP....anakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96
                    d  lP + v ri+k  l     +n ++ kda   + e +   i+f+t+ +sd c+++kr+ti++dd+l al +l f d v+pl+v l  +r++ ++
  XP_013895546.1  3 DTDLPKSVVKRIVKAKLDclgeGNVQLHKDATLALAESAKVLITFITAASSDICKEKKRQTISADDVLAALEDLEFGDLVAPLQVALDAHRQAAKA 98
                    67799999******99863323578899**************************************************************998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.02E-243113IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.1E-273103IPR009072Histone-fold
PfamPF008081.4E-9573IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0071897Biological ProcessDNA biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003887Molecular FunctionDNA-directed DNA polymerase activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MADTDLPKSV VKRIVKAKLD CLGEGNVQLH KDATLALAES AKVLITFITA ASSDICKEKK  60
RQTISADDVL AALEDLEFGD LVAPLQVALD AHRQAAKAKS QKRAEATKKR KEREGAEAAA  120
AAGGGAGDAA AGQDQRPAGS GEEGGGGAGS GSGSDGEGEG GEDGSDEGEA DGSGDGDEEK  180
DAEGQGGGSE EDKEGAGGGQ QDDGDEEMDE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013895546.11e-139DNA polymerase epsilon subunit 3
TrEMBLA0A0D2M5K11e-137A0A0D2M5K1_9CHLO; DNA polymerase epsilon subunit 3
STRINGXP_005648182.19e-31(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP34531313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.17e-22nuclear factor Y, subunit B11
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]