PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

XP_013895687.1

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium

Family

Protein Properties

Length: 119aa MW: 12717.2 Da PI: 10.2098

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013895687.1	genome	BU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	65.2	1.1e-20	58	115	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDg WrKYG K v+ + ++++Y+rCt +gCp++k + ++ +++i Y+g+Hnhe XP_013895687.1 58 DDGSYWRKYGEKAVEAQGVTKGYFRCTEPGCPARKVITKDVGTAAITTIDYRGDHNHE 115 899******************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	18.016	52	117	IPR003657	WRKY domain
SMART	SM00774	4.9E-15	57	116	IPR003657	WRKY domain
SuperFamily	SSF118290	1.2E-17	57	115	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	6.0E-19	57	115	IPR003657	WRKY domain
Pfam	PF03106	3.8E-16	58	115	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 119 aa Download sequence Send to blast
MPHPPAHSPR ILRSSPAHSP RKRPAVEGAS PAPSPSKYKG PNGAPSPGYR GRGGSANDDG 60 SYWRKYGEKA VEAQGVTKGY FRCTEPGCPA RKVITKDVGT AAITTIDYRG DHNHEPLLN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013895687.1	3e-82	putative WRKY transcription factor 4
TrEMBL	A0A0D2JAA2	7e-81	A0A0D2JAA2_9CHLO; Putative WRKY transcription factor 4

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP469	16	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13960.1	2e-15	WRKY DNA-binding protein 4

Link Out ? help Back to Top
Entrez Gene	25728542

Publications ? help Back to Top
Bogen C, et al. Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics, 2013. 14: p. 926 [PMID:24373495]