PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013895755.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family C3H
Protein Properties Length: 257aa    MW: 25876.7 Da    PI: 3.8558
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013895755.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.13e-08727526
                    --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                     C+ff++ G C yGd+C+F H+
  XP_013895755.1  7 VCKFFLA-GNCAYGDQCRFEHS 27
                    6******.***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.7E-6228IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.239329IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-7427IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-5627IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-6727IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.737129157IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5129154IPR000571Zinc finger, CCCH-type
SMARTSM003560.074130156IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MHDSSQVCKF FLAGNCAYGD QCRFEHSGGR GDAIRPSSRR PPAGPGGGGP QYGGPPPPGQ  60
GEWSGGVYKW PSGADEFGLM ESSDPNPNWD DYMDPEEMEA FELWQKEQLE GGGGGAYPDG  120
FDGEDLVDPS DIPLCQEYEA HGACAGGDEC PLIHGEQCEG CGRYAIHPYN PELIAAHTKG  180
CGGAAAAGGG DGAGAAAAAE EGAAGQEAQD GEDSAAPAAA AEVAAEAGKQ EQTAGAAGGA  240
SAADELAAGL EATRIEG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013895755.11e-180hypothetical protein MNEG_11227
TrEMBLA0A0D2MQ131e-179A0A0D2MQ13_9CHLO; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.27e-09C3H family protein
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]