PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013896131.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family C3H
Protein Properties Length: 561aa    MW: 56122.6 Da    PI: 6.6668
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013896131.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.93.1e-07260280526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C+++ + G C +Gd+C++aHg
  XP_013896131.1 260 ACPDYKQ-GMCLRGDTCQYAHG 280
                     6******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.201.8E-825126IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029710.20682124IPR020683Ankyrin repeat-containing domain
SMARTSM002480.01182111IPR002110Ankyrin repeat
PROSITE profilePS500889.05782114IPR002110Ankyrin repeat
SuperFamilySSF484037.0E-882124IPR020683Ankyrin repeat-containing domain
CDDcd002043.50E-784170No hitNo description
SMARTSM002483700115152IPR002110Ankyrin repeat
Gene3DG3DSA:4.10.1000.101.8E-6251281IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.3E-5255283IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-6255281IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.136255282IPR000571Zinc finger, CCCH-type
SMARTSM003562.3290313IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.24290314IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MDGVLGHYIS ASGPGLGKAV ASWSTPLFNA VTQQDDLREL EQLVAPDALA DEEYLILCWG  60
SEPGKQADVA DKDQAKPRVQ VTKRTLLQLA AFHGSLRCVS CLLARGANPN HKSSDGLTAY  120
DVSVAAHARL SGSPNAPTVR AMLDDAAGNF TADGRSRSPA VAGGKGDMAR AGSSSSFGVE  180
AGADTSGADG DDYAPGESSN YSTSELTRPE YSTDTFRLYC FKVLRCSKRY AHDWRACPFA  240
HPTENARRRD PREHRYSSIA CPDYKQGMCL RGDTCQYAHG VFESWLHPSR YRTQLCKDGN  300
RCRRPVCFFA HSLTGELRTP THAFVPGPEE RMRVPQALEL QLAAAAARGG SPGHEGADAP  360
GTSGAGGDQG VDAVSAAAAA AAAAAAAAYV QAHHGAAAAS AAGGGAKALL EQGAAAAAAA  420
AAGGDFSALL RGSALARSGS GGGISDAAGA ALDQRDQQQP PAGTGTGAGA GVGAGVGAGS  480
GPQQQRARPS IDVSTAEAAG GAWGGPEESP GSSVPSASPG GAPHDAASTG SGGGGGGGSS  540
GAGTPAGGAA GVTAPRMSNA G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5elk_A5e-1123631131116RING finger protein unkempt homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1528538TGSGGGGGGGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013896131.10.0hypothetical protein MNEG_10850
TrEMBLA0A0D2M7K00.0A0A0D2M7K0_9CHLO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP601532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.14e-46CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]