PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013896501.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family ERF
Protein Properties Length: 200aa    MW: 20433 Da    PI: 12.0509
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013896501.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP269.94.6e-22113162255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdp++    +r +lg+f+taeeAa+a++ a+++++g
  XP_013896501.1 113 QYRGVRQRP-WGKWAAEIRDPTK---GQRLWLGTFDTAEEAARAYDSAAREIRG 162
                     6********.**********965...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.1E-32113175IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-30113165IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-21113166IPR016177DNA-binding domain
PROSITE profilePS5103223.367113171IPR001471AP2/ERF domain
CDDcd000188.74E-27113166No hitNo description
PfamPF008474.0E-15114162IPR001471AP2/ERF domain
PRINTSPR003672.8E-12114125IPR001471AP2/ERF domain
PRINTSPR003672.8E-12136152IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008219Biological Processcell death
GO:0009723Biological Processresponse to ethylene
GO:0009735Biological Processresponse to cytokinin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010286Biological Processheat acclimation
GO:0042991Biological Processtranscription factor import into nucleus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0051707Biological Processresponse to other organism
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MAPAVATPVD APLTASTGAQ GIEVRPARAT KGVPAPFVQQ QQLQRAAAAA AAAAAVAAAP  60
AALQQQLQQQ YFLPSHTLDP EGPRAAARQA AAAAFGSSSP VAGAGAARKF NNQYRGVRQR  120
PWGKWAAEIR DPTKGQRLWL GTFDTAEEAA RAYDSAAREI RGPNAVRLQI RARARVAGGL  180
GGGQAGAGPA RRVGSAVAAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-191111661268Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00027PBMTransfer from AT4G23750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013896501.11e-133hypothetical protein MNEG_10479
TrEMBLA0A0D2M8U21e-131A0A0D2M8U2_9CHLO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1321540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.31e-16related to AP2 2
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]