PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013896838.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family MYB_related
Protein Properties Length: 165aa    MW: 18168.8 Da    PI: 5.2804
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013896838.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.31.8e-0877124147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqky 47 
                      + rWT++    l+++v+++G   W+tI +     g+   qck++++++
   XP_013896838.1  77 KTRWTQDQIVALIEGVERHGLSAWRTIVQDPRlAGKNNMQCKDKFRNL 124
                      579*******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.42272125IPR017877Myb-like domain
SuperFamilySSF466891.87E-1176127IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.2E-1076125IPR009057Homeodomain-like
SMARTSM007171.9E-576127IPR001005SANT/Myb domain
CDDcd116601.39E-1179125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MQVLITDDGS EMLDRDATGG LVPISAYGIT DGSHVTLRIQ VPGVDDLDDV PLVDEAIVSS  60
AFALGVLQGR GGGNGRKTRW TQDQIVALIE GVERHGLSAW RTIVQDPRLA GKNNMQCKDK  120
FRNLCLTIIQ GRPERGLTLD WRLKDRVKTL IEQESIKLAE PPALW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013896838.11e-117hypothetical protein MNEG_10143
TrEMBLA0A0D2KQC71e-115A0A0D2KQC7_9CHLO; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-09telomere repeat binding factor 1
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]