PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013896976.1

Organism

Monoraphidium neglectum

Taxonomic ID

145388

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium

Family

C3H

Protein Properties

Length: 1169aa MW: 120532 Da PI: 10.9341

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013896976.1	genome	BU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.3	3e-09	1133	1157	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 + ++C++f r G C++Gd C+F+H+ XP_013896976.1 1133 RSRPCQYFNRPGSCRHGDDCSFMHV 1157 569*********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.930.10	4.8E-6	296	377	IPR017923	Transcription factor IIS, N-terminal
PROSITE profile	PS51319	9.485	306	385	IPR017923	Transcription factor IIS, N-terminal
SuperFamily	SSF47676	9.16E-6	310	379	IPR017923	Transcription factor IIS, N-terminal
Gene3D	G3DSA:4.10.1000.10	6.5E-8	1127	1156	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.57E-5	1129	1158	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.2E-5	1131	1158	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.117	1131	1159	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.8E-7	1133	1157	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1169 aa Download sequence Send to blast
MLDEPMSPGD SDSTDDEEPL SVRFAQRQSI VQVQESKQRT QGAPASDDEG SASDASGNDA 60 ANGASSTSSS SSGSGSDSSD ESSSADDDDN DAGSRLAKRR RRSGSSDGGG SAAGGAAGVK 120 RRTRRPSHYP RFNSKDRCGK CHTCLNPQMK KACITRREEY DQKIRRQQEQ DQGGQNASPR 180 PRKRKAATKN GAAATAAAPA PPPPPSSQPP QPPPPQQQQQ IERAQAKRQP KPAPAPPAAP 240 ESLAAYEGIL ASLIDHSGGV RPADAPALVA QLPRFTTAGS RRLALLVLGL TRERGLAAFM 300 AAGGADALAG WLAEARPRAA EGSKEAAALI VDVLKAVARL PVDMAFLKAS PITKAVGGLR 360 KHPVPAVEAE AKACVDQLYK RASAGSGAAD AAAAGRAPPA AKRAKTDDQA KAAAGAGGRH 420 PSASAAGAAS SIHLLSENDL FKPAAPKPKP AVQPQPPKVR RAARVRLGLA LSADGGRLER 480 EQGCVPGRVK PQAALVFNTG SAARPATTAR APQAAGVQRM DAAEARQLAA AAAANGRAPA 540 AVGAGRQQQQ KPQGQQEVVS ARIVVREDGS GVDLQLLLQK ANQEQHQAPA SAANSGMARI 600 GARPARPGFG NSAARPGAGA PPAAAAAGAA GVTRIGGVSR IGAPSSVTAR LLAAPALTGA 660 ALRAQRAAAQ VPEADQEPRR KAGSGKRVSW QADMRLVNVR WFRKEDAPQQ ARGDSLYTDE 720 ELRKAAHSHP TFSEAARQEH MREREFLQQM HHTEQHQQQH HQQHLQQQQQ QQQQQQQQQQ 780 QLHDNARRMR AAVAAVAPSV AWVPAPPVAL CADWGVAAGE DSSEAPRLQQ LAAGRPATAA 840 VFPAPSTPSE PPEHLRGRGA AAAGAPAVVI PWEPAPAAAP APVAVPTGAP QPQPLQQQQQ 900 QQQPAVQLAG GGYVVHPAAH GGMATVVLPA PAPAPAPAPA PVPVPAPAPA PAAAPPPGLQ 960 AVLSSLASIL PQATASATPP AGLAAPGAHS GLQLRPAPGA APAPSLFGSH SQLQPPRPAA 1020 PLFPPQQPQQ QQPQPQLQLF GAPPGQPGYT PVQHPLQGPS QQQQQQQRPP HHFGPPQQHN 1080 PQFAPAPGGF GPPHHGGPPP RGSGGGGGGP GPFQSHGRPG PGGPGGPRPP NFRSRPCQYF 1140 NRPGSCRHGD DCSFMHVRPG ESRDVREGR

Sequence ? help Back to Top

Protein Sequence Length: 1169 aa Download sequence Send to blast

MLDEPMSPGD SDSTDDEEPL SVRFAQRQSI VQVQESKQRT QGAPASDDEG SASDASGNDA  60
ANGASSTSSS SSGSGSDSSD ESSSADDDDN DAGSRLAKRR RRSGSSDGGG SAAGGAAGVK  120
RRTRRPSHYP RFNSKDRCGK CHTCLNPQMK KACITRREEY DQKIRRQQEQ DQGGQNASPR  180
PRKRKAATKN GAAATAAAPA PPPPPSSQPP QPPPPQQQQQ IERAQAKRQP KPAPAPPAAP  240
ESLAAYEGIL ASLIDHSGGV RPADAPALVA QLPRFTTAGS RRLALLVLGL TRERGLAAFM  300
AAGGADALAG WLAEARPRAA EGSKEAAALI VDVLKAVARL PVDMAFLKAS PITKAVGGLR  360
KHPVPAVEAE AKACVDQLYK RASAGSGAAD AAAAGRAPPA AKRAKTDDQA KAAAGAGGRH  420
PSASAAGAAS SIHLLSENDL FKPAAPKPKP AVQPQPPKVR RAARVRLGLA LSADGGRLER  480
EQGCVPGRVK PQAALVFNTG SAARPATTAR APQAAGVQRM DAAEARQLAA AAAANGRAPA  540
AVGAGRQQQQ KPQGQQEVVS ARIVVREDGS GVDLQLLLQK ANQEQHQAPA SAANSGMARI  600
GARPARPGFG NSAARPGAGA PPAAAAAGAA GVTRIGGVSR IGAPSSVTAR LLAAPALTGA  660
ALRAQRAAAQ VPEADQEPRR KAGSGKRVSW QADMRLVNVR WFRKEDAPQQ ARGDSLYTDE  720
ELRKAAHSHP TFSEAARQEH MREREFLQQM HHTEQHQQQH HQQHLQQQQQ QQQQQQQQQQ  780
QLHDNARRMR AAVAAVAPSV AWVPAPPVAL CADWGVAAGE DSSEAPRLQQ LAAGRPATAA  840
VFPAPSTPSE PPEHLRGRGA AAAGAPAVVI PWEPAPAAAP APVAVPTGAP QPQPLQQQQQ  900
QQQPAVQLAG GGYVVHPAAH GGMATVVLPA PAPAPAPAPA PVPVPAPAPA PAAAPPPGLQ  960
AVLSSLASIL PQATASATPP AGLAAPGAHS GLQLRPAPGA APAPSLFGSH SQLQPPRPAA  1020
PLFPPQQPQQ QQPQPQLQLF GAPPGQPGYT PVQHPLQGPS QQQQQQQRPP HHFGPPQQHN  1080
PQFAPAPGGF GPPHHGGPPP RGSGGGGGGP GPFQSHGRPG PGGPGGPRPP NFRSRPCQYF  1140
NRPGSCRHGD DCSFMHVRPG ESRDVREGR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013896976.1	0.0	hypothetical protein MNEG_10005
TrEMBL	A0A0D2MAJ1	0.0	A0A0D2MAJ1_9CHLO; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP4810	3	3

Link Out ? help Back to Top
Entrez Gene	25727124

Publications ? help Back to Top
Bogen C, et al. Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics, 2013. 14: p. 926 [PMID:24373495]