PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013897124.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family C3H
Protein Properties Length: 346aa    MW: 37279.1 Da    PI: 5.4072
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013897124.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.44.9e-13194219126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     y   lC+++ +tG+C+yGd CkF+H+
  XP_013897124.1 194 YQPDLCKDYKETGFCSYGDACKFMHD 219
                     6788*********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.06E-9192224IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.375193221IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-7193220IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-10194219IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-12194224IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.101.7E-10264320IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578504.89E-10274321No hitNo description
PROSITE profilePS500899.701275317IPR001841Zinc finger, RING-type
SMARTSM001841.8E-4275316IPR001841Zinc finger, RING-type
CDDcd001629.36E-4275320No hitNo description
PROSITE patternPS005180294303IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MYGAEQTTVP AAGGGDADAA PASTAGAAAS MPPPAAGGFK QRKNRGNLRK RAADEGGATG  60
GGGGEDDETE VVRKAKQTKG DPLAFSTKKE SKEDVVVTYA SSQALPIGGD SGATRILETE  120
TEFDRDARAR RERVLQQGAE GGGQGDGTYK GMTGYTDYRA GFRREQTVGS EKGAGAHGPL  180
RASAYVRVSA RFDYQPDLCK DYKETGFCSY GDACKFMHDR GDYKSGWELE REWEEEQKRR  240
QEALTKGWAG EDGEEGEGGG GHGEEEEDDE LPFACYICRK PWGECKSDPV VTKCKHYFCE  300
SCALKHNAKT GKCATCEQPT QGIFNLATDV IKKMKRLKDK EGAAVQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M3e-594233624319RING finger protein 113A
5z58_M3e-594233624319RING finger protein 113A
6ff4_t3e-594233624319RING finger protein 113A
6ff7_t3e-594233624319RING finger protein 113A
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013897124.10.0RING finger protein
SwissprotQ8GX843e-98C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
SwissprotQ9FNG64e-98C3H51_ARATH; Zinc finger CCCH domain-containing protein 51
TrEMBLA0A0D2M3F80.0A0A0D2M3F8_9CHLO; RING finger protein
STRINGEDP083591e-129(Chlamydomonas reinhardtii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP14831616
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.15e-76C3H family protein
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]