PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013897282.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family ERF
Protein Properties Length: 193aa    MW: 19965.1 Da    PI: 7.3526
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013897282.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.42.3e-151664255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +y+GV+wdkk+ rW++++       ++k++ lg+f+ta++Aaka+++   +l+g
  XP_013897282.1 16 QYRGVFWDKKTRRWRCQLGF-----QSKKIFLGYFDTAQDAAKAYDRKLVELRG 64
                    69***************666.....46**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.6E-141572IPR001471AP2/ERF domain
SMARTSM003808.9E-81678IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-151673IPR016177DNA-binding domain
PfamPF008475.2E-91664IPR001471AP2/ERF domain
PROSITE profilePS5103213.6831672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MEDELSDAER ERLKRQYRGV FWDKKTRRWR CQLGFQSKKI FLGYFDTAQD AAKAYDRKLV  60
ELRGASARTN YPITEYLSLL GTGVAPPQQR APGMLGDGFG GAAHFGDAGG GADAAAQLGG  120
ASAFGDQLNL QDLVNVGSGG GGTPSQLQLQ QQLLSLSGAG SGGGAAGGAG ASGGGGAADQ  180
AQLLLRQLDD TAR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013897282.11e-133hypothetical protein MNEG_9699
TrEMBLA0A0D2JFM31e-131A0A0D2JFM3_9CHLO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP3683512
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G39250.11e-10AP2 family protein
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]