PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013898061.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family C3H
Protein Properties Length: 464aa    MW: 47692.8 Da    PI: 6.8932
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013898061.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.92.7e-06981111427
                     --TTTTT-SS-SSS CS
         zf-CCCH  14 tCkyGdrCkFaHgp 27 
                      C++G++C+FaH++
  XP_013898061.1  98 VCPRGASCPFAHSM 111
                     6***********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.47489112IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-490114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-5117149IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MADDRGALLS DDRDTKGGDL KKSSKKGHTP ASPASTEIRS SELAPDFMMN VYKLKTCPRS  60
SSHDWRTCPY AHMGENAARR DHAKHLSVSC PDSKAKRVCP RGASCPFAHS MPEYFLHPSR  120
YRTQLCNDGN KCSRPICFFA HDAGELRTPH YPSLNAEQLE ALFAARAALS AQSEEELEAT  180
LRIPAPSSGG GILPGASGTM PPALLAPASY PAAVLAGEMT DATHDMYLNL LCQQQQQLLL  240
QQALLQQQAA ALSLFQQQPR HAGGGACDAP HPSKDQPCPG PRVAAPGHTS KQDSSDAQLL  300
GRAGQGLGGH MALLGGGGIG GAPAGLACLP VPVVPYLPQP LPQPSGHAFS NAGVSRGFDD  360
LFFPSVSSAP GCGGGGGAGS SAGGYSGSAM MMPPLSSDDM ALLAAAASAA AMNPGSAPQD  420
LLGPEGPMLL WAQAAAAQMV AAAPGLDSRL APPQSAAPGN SCIQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013898061.10.0Zinc finger CCCH domain-containing protein 50
TrEMBLA0A0D2ME800.0A0A0D2ME80_9CHLO; Zinc finger CCCH domain-containing protein 50
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP601532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07500.15e-32C3H family protein
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]