PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013898540.1

Organism

Monoraphidium neglectum

Taxonomic ID

145388

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium

Family

ERF

Protein Properties

Length: 1304aa MW: 132081 Da PI: 7.6968

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013898540.1	genome	BU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	42	2.3e-13	259	310	1	54
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkkle 54 s y+GV++dkk+ +W+++I++ + +s+g+f+t+ Aa+a+++a+ l XP_013898540.1 259 SEYRGVSYDKKKRKWRVQIKV----AalGKSGVSVGYFDTETAAARAYDRAAIGLL 310 569****************....44446******99*******98766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	4.51E-10	259	322	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	5.7E-10	260	322	IPR001471	AP2/ERF domain
SMART	SM00380	6.5E-5	260	328	IPR001471	AP2/ERF domain
Pfam	PF00847	2.4E-8	260	307	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	13.498	260	322	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	5.17E-12	365	423	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	3.7E-9	366	422	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	12.457	366	422	IPR001471	AP2/ERF domain
SMART	SM00380	1.1E-5	366	428	IPR001471	AP2/ERF domain
CDD	cd00018	2.00E-10	458	517	No hit	No description
SuperFamily	SSF54171	1.77E-6	458	516	IPR016177	DNA-binding domain
PROSITE profile	PS51032	12.576	459	515	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.3E-6	459	516	IPR001471	AP2/ERF domain
SMART	SM00380	4.0E-4	459	521	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1304 aa Download sequence Send to blast
MIKADAPEPR VSSSSAAGDP GDSLTAWHAG GGASGSGSGS GSGGAPADGR GGAAAGGARL 60 DAVGGLLGSD NDDQRRHHHH HRHGHPGLDG EEDDLEGMDV AGCDDDDEDD DEAPACSEEG 120 GDGALGGAAS GGGSFGRPGS PGVMSGAVFG IPQFGLGGGG AGAGGGAGGG AAARGDSARP 180 QLSGTSSLAP PSPVRGPGGD DGGSSSGSMQ HVGAAPPGNA HHNPAAAAVH QQHQQRQQQA 240 AAATAAAAAQ GGAPPVFRSE YRGVSYDKKK RKWRVQIKVA ALGKSGVSVG YFDTETAAAR 300 AYDRAAIGLL GRQSCRTILN YPMEDYENDN VPELVGKTRE EVKATLKSER AKMPRRRLSS 360 RRRTSKYLGV GSSNRKNQWQ ARILYHGKVT HLGYYRTEEE AARVYDKVSI SLHGDNAQTN 420 FPIDQYAKDV PALQQRLSGL SREELQRALG VKPMDRSSKY RGVGKKRGRW EAKVVLNRRW 480 AYRELFDSEE DAARAYDGAI WRLRPRDARS YVNFKDSCPQ DVAEVLQRAF KDHQPVPLHA 540 SGLPLTAAPL VEAGLLYDEE GASIRTSQHR MARIVSAGDL ATIGDVVAAT SSDPSGAQDA 600 SCAASGGTPT ADARGAGVRL APFAGASPVD QQQQLLRQQQ QQQQQLQQQQ QQQQLQQQQQ 660 QQQQQQLQQQ RAVAAAAVAA GAPISLHHPL SQAAHPLGLG SGGSGGGAAV AAAAAAAAAA 720 AGAAPAGLGF HAEQPGLAGP GSSALAPIGG AAGAAALGGL GGGLAGLPLY GGSAQHYHPH 780 LSASPAFGGA ADAGSPHLRL GGLAGGLGLQ GPHQRPGLGA GEGGIQGVPS SLGLGALPGL 840 HHAHAAHQPG GVVKVEGGYW GSDHLASNGG AAVAAVASIG RSRSIGSFAL SGGDMSPLHH 900 LPQQHQQPTV ATATMLQQQH QQLQRQASSS DGSPPFAAPH AASAAAVAAA AAAAAARPLL 960 VRVGSEQHLI APQPTQLALK GLSRIASESC LGSMVPLGPG AGGLLGGGAS GEGGGGGGGA 1020 LAARQQSVQQ QALLLHQQHL QQQQALYREH QQQQLGLLLQ QQQQQQMAHH HQQAQQQQQQ 1080 QQQQQQQQQQ QQQQQQQQRG VHGQGHLLLQ RSHSVAVMGG LEAIDERGAT CTFQALPGSV 1140 RGAGMALGGG AGGLGPGLPP LSPELMMGGS GGGMGALPAH LSCGVPQGYG ARTPGLQQHA 1200 PPALALGGGH SPLPAVPPLG LKPGGGPAAI ALTAWAPGGA AEAQHAQHAP PARPHSPFGL 1260 HGSVQIGGED LDMALAFLSD GPGGSARPSE AGGDGAARMD ETAG

Sequence ? help Back to Top

Protein Sequence Length: 1304 aa Download sequence Send to blast

MIKADAPEPR VSSSSAAGDP GDSLTAWHAG GGASGSGSGS GSGGAPADGR GGAAAGGARL  60
DAVGGLLGSD NDDQRRHHHH HRHGHPGLDG EEDDLEGMDV AGCDDDDEDD DEAPACSEEG  120
GDGALGGAAS GGGSFGRPGS PGVMSGAVFG IPQFGLGGGG AGAGGGAGGG AAARGDSARP  180
QLSGTSSLAP PSPVRGPGGD DGGSSSGSMQ HVGAAPPGNA HHNPAAAAVH QQHQQRQQQA  240
AAATAAAAAQ GGAPPVFRSE YRGVSYDKKK RKWRVQIKVA ALGKSGVSVG YFDTETAAAR  300
AYDRAAIGLL GRQSCRTILN YPMEDYENDN VPELVGKTRE EVKATLKSER AKMPRRRLSS  360
RRRTSKYLGV GSSNRKNQWQ ARILYHGKVT HLGYYRTEEE AARVYDKVSI SLHGDNAQTN  420
FPIDQYAKDV PALQQRLSGL SREELQRALG VKPMDRSSKY RGVGKKRGRW EAKVVLNRRW  480
AYRELFDSEE DAARAYDGAI WRLRPRDARS YVNFKDSCPQ DVAEVLQRAF KDHQPVPLHA  540
SGLPLTAAPL VEAGLLYDEE GASIRTSQHR MARIVSAGDL ATIGDVVAAT SSDPSGAQDA  600
SCAASGGTPT ADARGAGVRL APFAGASPVD QQQQLLRQQQ QQQQQLQQQQ QQQQLQQQQQ  660
QQQQQQLQQQ RAVAAAAVAA GAPISLHHPL SQAAHPLGLG SGGSGGGAAV AAAAAAAAAA  720
AGAAPAGLGF HAEQPGLAGP GSSALAPIGG AAGAAALGGL GGGLAGLPLY GGSAQHYHPH  780
LSASPAFGGA ADAGSPHLRL GGLAGGLGLQ GPHQRPGLGA GEGGIQGVPS SLGLGALPGL  840
HHAHAAHQPG GVVKVEGGYW GSDHLASNGG AAVAAVASIG RSRSIGSFAL SGGDMSPLHH  900
LPQQHQQPTV ATATMLQQQH QQLQRQASSS DGSPPFAAPH AASAAAVAAA AAAAAARPLL  960
VRVGSEQHLI APQPTQLALK GLSRIASESC LGSMVPLGPG AGGLLGGGAS GEGGGGGGGA  1020
LAARQQSVQQ QALLLHQQHL QQQQALYREH QQQQLGLLLQ QQQQQQMAHH HQQAQQQQQQ  1080
QQQQQQQQQQ QQQQQQQQRG VHGQGHLLLQ RSHSVAVMGG LEAIDERGAT CTFQALPGSV  1140
RGAGMALGGG AGGLGPGLPP LSPELMMGGS GGGMGALPAH LSCGVPQGYG ARTPGLQQHA  1200
PPALALGGGH SPLPAVPPLG LKPGGGPAAI ALTAWAPGGA AEAQHAQHAP PARPHSPFGL  1260
HGSVQIGGED LDMALAFLSD GPGGSARPSE AGGDGAARMD ETAG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013898540.1	0.0	AP2-like ethylene-responsive transcription factor TOE3
TrEMBL	A0A0D2MZG4	0.0	A0A0D2MZG4_9CHLO; AP2-like ethylene-responsive transcription factor TOE3

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP6244	6	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67180.1	2e-16	target of early activation tagged (EAT) 3

Link Out ? help Back to Top
Entrez Gene	25741317

Publications ? help Back to Top
Bogen C, et al. Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics, 2013. 14: p. 926 [PMID:24373495]