PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013898968.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family C2H2
Protein Properties Length: 331aa    MW: 34563.7 Da    PI: 9.071
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013898968.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-051435323
                    ETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2  3 CpdCgksFsrksnLkrHirt.H 23
                    C +C+++F++  +L++H++  H
  XP_013898968.1 14 CFYCDRTFNDEGTLVQHQKGkH 35
                    99****************9877 PP
2zf-C2H211.80.000733655120
                    EEETTTTEEESSHHHHHHHH CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHi 20
                    +kCp C++  s+   L++H 
  XP_013898968.1 36 FKCPECNRKLSSARGLQVHA 55
                    89*****************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.04E-5958No hitNo description
PROSITE profilePS501578.9121235IPR007087Zinc finger, C2H2
SMARTSM003550.0181235IPR015880Zinc finger, C2H2-like
PfamPF121711.4E-51334IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002801435IPR007087Zinc finger, C2H2
SMARTSM003550.0213659IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.0373659IPR007087Zinc finger, C2H2
PROSITE patternPS0002803859IPR007087Zinc finger, C2H2
Gene3DG3DSA:1.10.510.107.3E-5260319No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MGKKKKKDKQ VTFCFYCDRT FNDEGTLVQH QKGKHFKCPE CNRKLSSARG LQVHAFQVHK  60
LTLNAVPGCL PGREDMARDI FGMAGIPEGA EPGRPFGEHG DVDPEASKKP RLDDGPAGPG  120
PAPAAAAAAA APAALPPAAG PALDPGAAAP VGGVSMAGSM TANGGMMPNA GMMANGAGMG  180
MGPAGMGMGM TPQMAMMQGL MAGGLPGMMM AQRAAMMMGA AGMMGAGGMM GGGLPGMGMG  240
FGMGMGAPRP PVSVPGMQQQ QQQQQQQQPP QQQSQQPQQQ QQFQQPPLQQ QFQQQQQHQQ  300
QFQQLPLQQQ QQQQQQQVPQ PLAQQGVAFP G
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013898968.10.0Zinc finger protein
TrEMBLA0A0D2KXB50.0A0A0D2KXB5_9CHLO; Zinc finger protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP41351011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30970.16e-28C2H2 family protein
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]