PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013899153.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family C3H
Protein Properties Length: 447aa    MW: 44637 Da    PI: 7.0767
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013899153.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.12.3e-064263426
                    ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                    + C++f++ G Ck+Gd C++ Hg
  XP_013899153.1 42 VACPDFRK-GVCKRGDECTYGHG 63
                    68******.***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.00173864IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.2863865IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-44263IPR000571Zinc finger, CCCH-type
SMARTSM00356197396IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.6157397IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0061157Biological ProcessmRNA destabilization
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003727Molecular Functionsingle-stranded RNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MYAFKVADCP NEEAHDWTEC PFAHPGEKAR RRDPRVFTYT GVACPDFRKG VCKRGDECTY  60
GHGVFECWLH PSRYRTQLCK DGPGCARRVC FFAHGDAQLR ASDGPEVQAE DGDPSDASAA  120
SMVGEEGTMS RTSSCTDASA DPKPAAPSPA AAPARAGASG RAPSPPVKGA AANAGKGGGG  180
GGGASGRGGS RCGSPAVGAA PRAASPGPAK GPSPVAPASA PMATSMPRDK RGLEHSPSSA  240
LLAAYAAAAG PAKGAAAAPV ACVAAASPLL PGSAEDLGLF SASSHLGSFS DCGAFGIHSD  300
LGLAPWAAAA PFSSALPMSL PPPADPSAPY AAAFAAARDA AAAALFGAAA AAAAQPQLPP  360
GPGADLGADG AAWLAARHHQ HLLTLQAEAA AVALWQHEQA QAQARQRAQQ LFELELAAGS  420
PAALAALQQE QLQRQLLAGS ALCLGRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013899153.10.0hypothetical protein MNEG_7827
TrEMBLA0A0D2KY230.0A0A0D2KY23_9CHLO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP601532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25900.24e-49C3H family protein
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]