PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013899189.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family MYB_related
Protein Properties Length: 258aa    MW: 27562.5 Da    PI: 6.1648
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013899189.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.62.8e-1369111346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       W ++E++ll++++  +G g+W+++++++g +++++qc++++++
   XP_013899189.1  69 DWGADEELLLLEGCDVYGFGNWAAVSEHVG-TKSREQCREHYFS 111
                      6*****************************.***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM002913.0E-9651IPR000433Zinc finger, ZZ-type
PfamPF005693.1E-9941IPR000433Zinc finger, ZZ-type
CDDcd023354.14E-231058No hitNo description
PROSITE profilePS5013510.5311053IPR000433Zinc finger, ZZ-type
SuperFamilySSF578502.83E-141073No hitNo description
PROSITE patternPS0135701239IPR000433Zinc finger, ZZ-type
SuperFamilySSF466891.94E-1262114IPR009057Homeodomain-like
PROSITE profilePS5129319.59365117IPR017884SANT domain
SMARTSM007174.9E-1066115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-869111IPR009057Homeodomain-like
PfamPF002493.6E-1369110IPR001005SANT/Myb domain
CDDcd001674.89E-1270109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009631Biological Processcold acclimation
GO:0009733Biological Processresponse to auxin
GO:0009735Biological Processresponse to cytokinin
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MSDHGQRALY HCNYCHTDIS NEVRIKCADC QDFDLCLDCF AVGVEVTPHR NTHRYRVVDN  60
LSFPLLHPDW GADEELLLLE GCDVYGFGNW AAVSEHVGTK SREQCREHYF STYVDVPTFP  120
LPTPAPEMAG VDVRWLADQA RAGGGRKRQR LDPQQLQQAN ADNPRQAKAS AGGAPPAAAA  180
QQPPAAAQQQ QKGFAGAAPG AAGGAGPGGQ PGGLGLSSKG LPHGAAAGVK AGSGGWDTTG  240
WHAKRGEFDF EYDQEKQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cw3_E8e-35101225117Transcriptional adapter 2
6cw3_G8e-35101225117Transcriptional adapter 2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013899189.10.0Transcriptional adapter ADA2
TrEMBLA0A0D2MA800.0A0A0D2MA80_9CHLO; Transcriptional adapter ADA2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP187466
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]