PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013899838.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family ERF
Protein Properties Length: 568aa    MW: 56690.2 Da    PI: 9.6057
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013899838.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.33.8e-13116165155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+++GV+w++k++rW A I         k+ +lg++  ++eAa a ++a+ kl+g
  XP_013899838.1 116 SKFRGVCWNRKNKRWQAAINSG-----GKYLYLGSYIEEDEAAMAFDRAAIKLRG 165
                     79****************8883.....4**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.50E-14116172No hitNo description
SuperFamilySSF541713.6E-13116174IPR016177DNA-binding domain
PfamPF008478.8E-8116165IPR001471AP2/ERF domain
SMARTSM003802.3E-14117179IPR001471AP2/ERF domain
PROSITE profilePS5103214.565117173IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-12117173IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MQRRSSARLA EASLQMVDVT GAAASVAGPA PLPGLGASLL NMPLQEQLKL MQQGGALPVA  60
APLVLNGAAG GVAGGSPPSP SGAAGRKKPQ RGSVARPSAR EPTKGTTSSS NRPLSSKFRG  120
VCWNRKNKRW QAAINSGGKY LYLGSYIEED EAAMAFDRAA IKLRGRKGKL NFTYEDYVDS  180
QGNLKEDIHL PDSAKDGAPK DGGASKAGAA AKRGKGGRGG AGGGADAGGV GGAGVGVGVG  240
VPVTSAPLSG GGIFSSGLSS LSMEDVKRLL SGNSGAAPPP LMGAGAPDRG VTTGFQQQQP  300
QQLDGAAGGH PGWGAVLQSF RPIIEAELGE GRAIQQLVEP QHAGGGGGNG SNGGGGAGAS  360
LIKGVVYSQA AGGGLAYGAA LWDGARLVDH GTKPNLESAL ETATSLAAGE EDLQGDAALR  420
DLLGGPSALV PRATSLALFQ ALGSLRAGDL PSLDLGDLPI EAPNTTTTAA AAAAAMSEAG  480
ASACDPPGTG GKRTRGGGGM GGKGGKRARR GQGDEDDVAE QQQQQQQQQQ QQQQLEQQQQ  540
QFASTAGLAK TGLADMLKNL AGMQQVAQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1489497GGKRTRGGG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013899838.10.0hypothetical protein MNEG_7142
TrEMBLA0A0D2L0600.0A0A0D2L060_9CHLO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP3683512
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G39250.11e-10AP2 family protein
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]