PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013900329.1

Organism

Monoraphidium neglectum

Taxonomic ID

145388

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium

Family

C3H

Protein Properties

Length: 531aa MW: 54876.4 Da PI: 7.925

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013900329.1	genome	BU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.5	9.7e-08	62	82	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C++ +r+G C++Gd+C++aH+ XP_013900329.1 62 CPDIRRSGRCPRGDSCPYAHS 82 666679**************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	1.6E-4	56	83	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	7.06E-6	60	87	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.1E-7	61	86	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.385	61	84	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.4E-5	61	82	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	13	92	115	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 531 aa Download sequence Send to blast
MSACTETALA SGLAQLIKEW SPDKMMYQFK AAHDWLECPF AHRGEKAARR DPRTHSHVAV 60 ICPDIRRSGR CPRGDSCPYA HSVFELHLHP SRYRTQLCTM GASCRRPVCF FAHTLTELRS 120 GSGDTASAAA AVAAASAAAS APASDDAIVP PPPPGSAAAA APRGFSFDLA ADGGAASAAA 180 IRAAAAAPGR GRMSFDTAVG AAAAAAANAA GGVLPTSALC RPADALRLSL PPLLPTELGF 240 ASHEDAAAVM AMASMQGGSP RSGSLSSSSL SLSAPFTSVS SPPPWLVADA HHPQQVRTAL 300 ALLERANSGS SAGASGSPGR GGRRGGLDGG SRPHPSPVAM SWTGQTLLGS GAFDPEQQQR 360 LLSALFVQQQ CEQLAAQQCE ALAAQQREQH AALLAAQQRE QQLLAVQQQQ QQQQQQQQQQ 420 QQQHQHQQHQ AAAAAADARE QQRRAALQAL WLQERRAAAA AAAAVAAARQ ESEALEALRC 480 ALASQQFEAH HALAAGAAVS AAPAAPQVSA GGPGDYLSLG THLSMLQLPH L

Sequence ? help Back to Top

Protein Sequence Length: 531 aa Download sequence Send to blast

MSACTETALA SGLAQLIKEW SPDKMMYQFK AAHDWLECPF AHRGEKAARR DPRTHSHVAV  60
ICPDIRRSGR CPRGDSCPYA HSVFELHLHP SRYRTQLCTM GASCRRPVCF FAHTLTELRS  120
GSGDTASAAA AVAAASAAAS APASDDAIVP PPPPGSAAAA APRGFSFDLA ADGGAASAAA  180
IRAAAAAPGR GRMSFDTAVG AAAAAAANAA GGVLPTSALC RPADALRLSL PPLLPTELGF  240
ASHEDAAAVM AMASMQGGSP RSGSLSSSSL SLSAPFTSVS SPPPWLVADA HHPQQVRTAL  300
ALLERANSGS SAGASGSPGR GGRRGGLDGG SRPHPSPVAM SWTGQTLLGS GAFDPEQQQR  360
LLSALFVQQQ CEQLAAQQCE ALAAQQREQH AALLAAQQRE QQLLAVQQQQ QQQQQQQQQQ  420
QQQHQHQQHQ AAAAAADARE QQRRAALQAL WLQERRAAAA AAAAVAAARQ ESEALEALRC  480
ALASQQFEAH HALAAGAAVS AAPAAPQVSA GGPGDYLSLG THLSMLQLPH L

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013900329.1	0.0	Zinc finger CCCH domain-containing protein 2
TrEMBL	A0A0D2MDN4	0.0	A0A0D2MDN4_9CHLO; Zinc finger CCCH domain-containing protein 2

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP60	15	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25900.2	1e-32	C3H family protein

Link Out ? help Back to Top
Entrez Gene	25739528

Publications ? help Back to Top
Bogen C, et al. Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics, 2013. 14: p. 926 [PMID:24373495]