PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013900580.1

Organism

Monoraphidium neglectum

Taxonomic ID

145388

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium

Family

bZIP

Protein Properties

Length: 342aa MW: 36749.5 Da PI: 9.4592

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013900580.1	genome	BU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	41.7	2.5e-13	4	53	3	52
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 ++k+++r+ kNReAA+r R+R+ i+ L + v+ L+a N++L+ l l XP_013900580.1 4 DDKAAIRRLKNREAAKRVRERRVNAIKTLSDQVDILTADNERLRTALAAL 53 589*****************************************988776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.1E-7	2	69	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.979	4	54	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.3E-10	4	54	No hit	No description
SuperFamily	SSF57959	5.06E-9	6	55	No hit	No description
Pfam	PF00170	8.4E-10	6	53	IPR004827	Basic-leucine zipper domain
CDD	cd14686	5.20E-9	7	55	No hit	No description
PROSITE pattern	PS00036	0	10	24	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MGLDDKAAIR RLKNREAAKR VRERRVNAIK TLSDQVDILT ADNERLRTAL AALSAGQAPL 60 APLEDLLQAP PDLPSEATDV INKIRLTDDK EGVRTAVAAV AGAPGHPAAA GPSTPSAASG 120 PSSSTKACGT QTDPVEPPRP RPTELIRSLM TSLQQQHRDM MATPGVVPAS TMEQLQAMME 180 LQLCVQQSMA ALMSQQQAAM QQQVMLAAAG PQAAAVAAQQ PQQQRGGSAA SPGGSGGQQQ 240 AASVQLAQQQ QLQQQQQLQQ QQQLQQQQQL ELQLQQQQQQ QQLQQQQQQQ LQQQQQQQQQ 300 VAQLQQAAQQ QQAMAMLQLA AMGVGGMQGM LPARHQTRGR AI

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MGLDDKAAIR RLKNREAAKR VRERRVNAIK TLSDQVDILT ADNERLRTAL AALSAGQAPL  60
APLEDLLQAP PDLPSEATDV INKIRLTDDK EGVRTAVAAV AGAPGHPAAA GPSTPSAASG  120
PSSSTKACGT QTDPVEPPRP RPTELIRSLM TSLQQQHRDM MATPGVVPAS TMEQLQAMME  180
LQLCVQQSMA ALMSQQQAAM QQQVMLAAAG PQAAAVAAQQ PQQQRGGSAA SPGGSGGQQQ  240
AASVQLAQQQ QLQQQQQLQQ QQQLQQQQQL ELQLQQQQQQ QQLQQQQQQQ LQQQQQQQQQ  300
VAQLQQAAQQ QQAMAMLQLA AMGVGGMQGM LPARHQTRGR AI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013900580.1	0.0	hypothetical protein MNEG_6403
TrEMBL	A0A0D2N6P2	0.0	A0A0D2N6P2_9CHLO; Uncharacterized protein

Link Out ? help Back to Top
Entrez Gene	25739279

Publications ? help Back to Top
Bogen C, et al. Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics, 2013. 14: p. 926 [PMID:24373495]