PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013900797.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family C2H2
Protein Properties Length: 391aa    MW: 39484 Da    PI: 9.9234
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013900797.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.7e-061435323
                    ETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2  3 CpdCgksFsrksnLkrHirt.H 23
                    C +C+++F++ s+L++H++  H
  XP_013900797.1 14 CFYCDRTFNDESTLVQHQKAkH 35
                    99****************9888 PP
2zf-C2H212.60.000433656121
                    EEETTTTEEESSHHHHHHHHH CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHir 21
                    ykCpdC++  +++  L +H  
  XP_013900797.1 36 YKCPDCHRKLNTSRGLSVHAY 56
                    9******************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.95E-5958No hitNo description
PROSITE profilePS501579.4941235IPR007087Zinc finger, C2H2
SMARTSM003550.0141235IPR015880Zinc finger, C2H2-like
PfamPF121717.0E-51332IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002801435IPR007087Zinc finger, C2H2
PROSITE profilePS501578.7043659IPR007087Zinc finger, C2H2
SMARTSM003550.133659IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803859IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009910Biological Processnegative regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MGKKKKKDKE VIFCFYCDRT FNDESTLVQH QKAKHYKCPD CHRKLNTSRG LSVHAYQVHK  60
LTINAVPGAK PGRESMDREI FGMNGVPDGA EPGKPFGEND GEEPESKKPR TDEPPAAGLG  120
AVAAAPAAPM AGAYGAAAAP PPMGYGAPPG MRPPGMPPMG MGMGMPPQGM PRPPYPGMPG  180
APPSPYPGYG PPRPYGMPPY GGPPPPPLMG GMPPRGGPGG PLFPIGGPHG APPGPGAPLF  240
PIAGAQPPPP AGAPGGAANG AASAGASAQQ PSAGASAQQP SASAPPQQQQ QQQQQQQQQQ  300
QQQQHYQQQQ QASAPPGPPA PAPLPTAAGV PLPARGLAPS PQLGLRPPGP PAPIGAPPVM  360
LRPPGPPPVA GGSLPTGGQL HLPQAAPGPP R
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013900797.10.0Zinc finger protein
TrEMBLA0A0D2JS050.0A0A0D2JS05_9CHLO; Zinc finger protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP41351011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30970.12e-32C2H2 family protein
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]