PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013900848.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family C3H
Protein Properties Length: 487aa    MW: 48506.7 Da    PI: 8.4931
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013900848.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH45.51.2e-14106131126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     yktelC+++++ GtC+yG +C+FaHg
  XP_013900848.1 106 YKTELCKNWSALGTCRYGVKCQFAHG 131
                     9************************9 PP
2zf-CCCH36.67.7e-12145168225
                     -S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                     k  lCr+fa tG C+yG rC+F H
  XP_013900848.1 145 KSDLCRTFAITGSCPYGTRCRFQH 168
                     5689******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF819952.35E-6783No hitNo description
Gene3DG3DSA:1.25.10.102.3E-41166IPR011989Armadillo-like helical
Gene3DG3DSA:4.10.1000.108.3E-16102137IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-9104136IPR000571Zinc finger, CCCH-type
SMARTSM003568.9E-9105132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.76105133IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-11106131IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-10140170IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-7142170IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-5143170IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.69143171IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8145168IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MSSVFAQPEQ QSQQHDAVNQ HQQHQNYQQQ QQQQEQQQQQ QQQQQQQQLQ QQQQQLQQQH  60
TLANLPMQQA QHSTPRREAA PPLLLSPQRS ASGGVDPYCK PNNFLYKTEL CKNWSALGTC  120
RYGVKCQFAH GTLELRPASR PPRAKSDLCR TFAITGSCPY GTRCRFQHAE PGSASAAAAL  180
AAARASPQQG GSAGAGAAAA LGARRQAEAA RRLAAAGGEY CAGGLFDASG AECPSPLPNM  240
LALSGAASAH RAGGGAMLPM LPQASPAAAS AGAAAAAAGL YSPASAGGGR IGGRSSFGSG  300
AGGSSGSFDA PLSGAGSGPL VNPLAAWDAA AAGGGAGHVG TTTQGSMGGG SARVFAQPLG  360
AIGTPSGTGT ALMQQGGIPG FAICSSPGAT LWGAAGIAGQ APSPLAAAAV PTPSLQPMPQ  420
QQAAFGGSGA AEPPAGPGLL ASGDPIQDLL QALTLGQGQS QGQCQLGEGP RGSAAASPPA  480
DAPRTNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A1e-21106168466Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013900848.10.0Zinc finger protein zfs1
TrEMBLA0A0D2L3Q60.0A0A0D2L3Q6_9CHLO; Zinc finger protein zfs1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP36231314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.13e-19C3H family protein
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]