PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013900945.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family ERF
Protein Properties Length: 795aa    MW: 85761.8 Da    PI: 7.7159
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013900945.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.23.5e-12857155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++++GV+wd k++rW+A+   +   g k+k++ lg++  ++eAa a+++   +l+g
  XP_013900945.1  8 TRHRGVFWDGKNHRWRAQ---V---GyKNKKIFLGYYHNPDEAAVAYDRKVVELHG 57
                    579***************...6...7678*********************999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-4950IPR001471AP2/ERF domain
PROSITE profilePS5103212.629965IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-13966IPR016177DNA-binding domain
SMARTSM003802.8E-5971IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.1E-91065IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 795 aa     Download sequence    Send to blast
MDGAEGKTRH RGVFWDGKNH RWRAQVGYKN KKIFLGYYHN PDEAAVAYDR KVVELHGTLA  60
KTNYPIEEYL SEIVLTAGER RTPRPRAPGG AQRRPGGGSA AAGAKRKAGE VSQDCDDAGT  120
GARIDARLQV LAAPPDLFIA APTTHFAPTG AAAGLHQPHT APQPLQQQQP HQHQQHVYMS  180
AASGFTTEGA GEYCGTPTTG AYSSFALNPS FARVVQTLQT QQAQAQPQPQ PQPQPQPQGH  240
QQQAPQAMML MHPQQQQQQQ QQQQQQQQQP DACPWQQSAH AGPQQQVWAP AQQGWQQQLP  300
GAEQLRALTM PGTVVTTWQQ QQQHQQQQQQ QQQPSTPGTP LTPTQLGVQQ PQRMATVFMQ  360
SVQNAAGGSS SPMAGTTVYQ VAWPEQPQHA ATWQQQQPLL LQQQQQQQQV PQQHLPQQQS  420
HMPLPVWQQV WQQGRQQQQQ QQQQQQPQQA QQGQQQQQQQ QQQQQQQQQQ AHQGQPQAQQ  480
LVLAAAQLPV TGPCYSQPSV TSCLPVSHMQ QLAAAIGAVG AGPACGGMQQ QQQQWQLGAL  540
EPQLQQQAPV LAVRPLQPSP AHQHFEQPVG TCHTQQQQQL QQQQQQQQQQ QQQQADDPQD  600
LLHQVLVSAG VITPDQIQGM LPGSLAELVK QALMRVGTTT NDAAPAPAAP PPAPAPAAPS  660
PAGPPSAGLS PGAGAPAHSA AGPSAAAAAA AQQQQQQQQQ CGGDTISRWS SAASCDITTE  720
QLVGQLGAAA GGTQQQQQQH RQQQQMDPRP QPQGMGAAAG DAVAGGMRLQ PLGRPDAPLQ  780
RLAAQNSPQP AAQQG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013900945.10.0hypothetical protein MNEG_6038
TrEMBLA0A0D2N7Z10.0A0A0D2N7Z1_9CHLO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP3683512
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.18e-07ERF domain protein 11
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]