PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013901033.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family C3H
Protein Properties Length: 230aa    MW: 23228.9 Da    PI: 8.0318
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013901033.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.34.6e-123660227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                    kt+lC+++a  G C++GdrC+FaHg+
  XP_013901033.1 36 KTKLCQRWAN-GDCRFGDRCNFAHGE 60
                    8*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.7E-153366IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.6333461IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-73460IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.1E-83465IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-93660IPR000571Zinc finger, CCCH-type
PROSITE profilePS5002012.531190224IPR001202WW domain
SMARTSM004567.6E-10191224IPR001202WW domain
SuperFamilySSF510451.48E-8191224IPR001202WW domain
PfamPF003974.9E-11193222IPR001202WW domain
Gene3DG3DSA:2.20.70.108.8E-9193222No hitNo description
CDDcd002013.67E-7193224No hitNo description
PROSITE patternPS011590196222IPR001202WW domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MDGAFPSQRG QAFADGGQDA AAAARRGFRG TAENAKTKLC QRWANGDCRF GDRCNFAHGE  60
HELRTLPPRG DMGYGPGGPG RGGGPGYGPP RGGYGGGYGG RGMGMGGRGG GWDDGYGGGG  120
GYGEPGYGGG GYPQGGGGYG GPPGGGYGGP PQQQMQGGGP GYAGPRDAGR PYGGGPPAGE  180
DTYARSGFPV QGPNGWVAYK TQDTGETYYH NHNSNVTQWD RPVDWPSAPA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013901033.11e-153RNA binding protein
TrEMBLA0A0D2L4F31e-151A0A0D2L4F3_9CHLO; RNA binding protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP569077
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.14e-10C3H family protein
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]