PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013901055.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family M-type_MADS
Protein Properties Length: 159aa    MW: 17214.6 Da    PI: 9.0446
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013901055.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.87.9e-151458751
                    HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      rq t+ kR+  ++ KA EL v+C+ +va+++f  +g+l  +s+
  XP_013901055.1 14 GLRQETYEKRKRSLMRKAMELAVMCNSQVALVMFDDKGRLTQFST 58
                    5799***************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006619.554160IPR002100Transcription factor, MADS-box
SMARTSM004323.9E-11159IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-14222IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.23E-20275IPR002100Transcription factor, MADS-box
PfamPF003197.5E-141656IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-142237IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-143758IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009838Biological Processabscission
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0010150Biological Processleaf senescence
GO:0030154Biological Processcell differentiation
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0080187Biological Processfloral organ senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MRHRTELRYI QQGGLRQETY EKRKRSLMRK AMELAVMCNS QVALVMFDDK GRLTQFSTAE  60
MDAVLEQYGK AVLEPHERYT PHDMLYGNVW ANGFGLGPMA GGAGGTTQGT APAQSPGDSP  120
ASSSEAFQAA AGAQQLLGPL GLAVDAATFP PLSPRRLRT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013901055.11e-115MADS-box transcription factor 55
TrEMBLA0A0D2N8G61e-113A0A0D2N8G6_9CHLO; MADS-box transcription factor 55
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP36561314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22950.12e-15AGAMOUS-like 19
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]