PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

XP_013901402.1

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium

Family

Protein Properties

Length: 163aa MW: 18200.1 Da PI: 10.0029

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013901402.1	genome	BU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.9	3.3e-11	11	69	3	61
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 e++r rr+q+NRe+ArrsR+RK++ ++ Le+ + + + +++ + +++e + + +l++ XP_013901402.1 11 EVRRMRRMQSNRESARRSRKRKQEHLQTLEQQLEDMLSRMQDAQARADEAERRALALED 69 789************************************99999999988877777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.8E-8	9	73	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	8.9E-9	10	61	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.967	11	74	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.2E-10	12	71	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.0E-8	13	71	No hit	No description
CDD	cd14702	1.32E-7	14	63	No hit	No description
PROSITE pattern	PS00036	0	16	31	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MEDMTGLDKN EVRRMRRMQS NRESARRSRK RKQEHLQTLE QQLEDMLSRM QDAQARADEA 60 ERRALALEDQ LGRARDEIER LGGDPAPHEV RNGGGQPSIE EQPAPGPGLK RQRKQQQPAA 120 ALAGDALDAR HHDPAPAAKR GKQNGGALNG RRRVSSSGDE ESE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	25	31	RRSRKRK
2	25	32	RRSRKRKQ
3	27	32	SRKRKQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013901402.1	1e-110	hypothetical protein MNEG_5580
TrEMBL	A0A0D2JTX4	1e-109	A0A0D2JTX4_9CHLO; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP5228	8	9

Link Out ? help Back to Top
Entrez Gene	25738457

Publications ? help Back to Top
Bogen C, et al. Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics, 2013. 14: p. 926 [PMID:24373495]