PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

XP_013901909.1

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium

Family

Protein Properties

Length: 217aa MW: 23287.1 Da PI: 6.0322

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013901909.1	genome	BU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	21	7.3e-07	147	199	10	62
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 10 kqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 ++kNR+A+rr+R++ ka i e ++k + + + +++k e++ l++e l+++ XP_013901909.1 147 REKNRLAQRRFREKQKATISEQKDKLDHMARQLDDYKREVQLLREENNILRAK 199 89********************************************9888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	0.0079	135	202	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	9.1E-7	146	201	No hit	No description
SuperFamily	SSF57959	8.13E-7	147	200	No hit	No description
PROSITE pattern	PS00036	0	147	160	IPR004827	Basic-leucine zipper domain
CDD	cd14686	2.06E-7	147	193	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MAGGALAGMA ALDALTGGHA ALAELNAQAA LLAGLPSNLQ QMVPPIAPLQ GIQTESQTID 60 ALQQAILATI NTSGSGMPNL FAALHTLGAE QGAPAPPQPS APPPQPQSQL EEETSEQGGA 120 SGSRKARRRA SDVEEEDDGN RTLANTREKN RLAQRRFREK QKATISEQKD KLDHMARQLD 180 DYKREVQLLR EENNILRAKL EGRATLHQHM ITDPPMG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013901909.1	1e-154	hypothetical protein MNEG_5066
TrEMBL	A0A0D2MIM5	1e-153	A0A0D2MIM5_9CHLO; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP7936	4	5

Link Out ? help Back to Top
Entrez Gene	25737943

Publications ? help Back to Top
Bogen C, et al. Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics, 2013. 14: p. 926 [PMID:24373495]