PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013902312.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family C2H2
Protein Properties Length: 700aa    MW: 74676.2 Da    PI: 4.6852
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013902312.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00033297321123
                     EEETTTTEEESSHHHHHHHHHH..T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt..H 23 
                     + C  C k+F++  +L +H r+  H
  XP_013902312.1 297 FYCVACEKVFRSAGQLASHERSkkH 321
                     78*****************998666 PP
2zf-C2H212.70.00037673692322
                     ETTTTEEESSHHHHHHHHHH CS
         zf-C2H2   3 CpdCgksFsrksnLkrHirt 22 
                     C+ Cg  F ++s L +Hi+ 
  XP_013902312.1 673 CQVCGAAFGSRSKLFKHIQE 692
                     *****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1103.8E-28390IPR001623DnaJ domain
SMARTSM002716.3E-27362IPR001623DnaJ domain
CDDcd062571.33E-20459IPR001623DnaJ domain
SuperFamilySSF465652.62E-26473IPR001623DnaJ domain
PROSITE profilePS5007620.464470IPR001623DnaJ domain
PfamPF002263.4E-24567IPR001623DnaJ domain
PRINTSPR006252.4E-17624IPR001623DnaJ domain
PRINTSPR006252.4E-172439IPR001623DnaJ domain
PRINTSPR006252.4E-174262IPR001623DnaJ domain
PROSITE patternPS0063604766IPR018253DnaJ domain, conserved site
SuperFamilySSF576672.35E-12287341No hitNo description
SMARTSM004511.3E-4294328IPR003604Zinc finger, U1-type
Gene3DG3DSA:3.30.160.602.0E-5297322IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121714.4E-9297321IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS501579.702297321IPR007087Zinc finger, C2H2
SMARTSM003550.24297321IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280299321IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.201671700IPR007087Zinc finger, C2H2
SMARTSM003550.28671695IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280673695IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MGRCLYEILG VERDADDDVL KKAYRKQALI WHPDKNAHRA EEAHERFQEI SNAYEVLSDK  60
HERAWYDSHR DQILRSGVRH QAGGDGGFEG GERPEEEEEL FSHFSSACYS GFGDDAKGFY  120
AVYSAIFSKL AEKEAAAFKA DDSRAGRSPP AFPAFGTASS GGPEVYAFYA FWSNFTSYKD  180
FAWADQYNPA TADNRQIRRK MEEENKKTRR AAKREYVDTV RELAAFVRKR DRRLAKFQAE  240
EAAKRAEREA AAAAKREEEK AARLAAAAAY KEPEWVRQSE AAAEDESESE EEDLPEFYCV  300
ACEKVFRSAG QLASHERSKK HLEALASLRE LLEDEEADLL LNGGGSGAGG ADGAGGEGVG  360
AKEEGEEEAG GGGGGGGRGK KQKKKRRQQQ QQQRRHEEAE GEGEEAGASG SGGEGKQRGG  420
GKEDGAEVQE EEEQGGEGED EAAAAASWAA QWQKQRQKKG RRKQQQQQQQ QQQQQQQQQQ  480
QQQQQQQQPA DEAVEDGSSG EGGESDQDDG SAAAAATAAS GSGMEEEEEK EEEAEAEEGS  540
SEGAGGDEAD EEEEGITSSS GRLAEDLEGL EVGGSGGGGG KRKGKGAKAA KAAAANGAKP  600
PPAARAGGSS AGAAAAAAVD GADSGSGGEG EGEGWDGDHG DPRVRRAAAK GDKRRSRAAK  660
KAQAEAEAAG LACQVCGAAF GSRSKLFKHI QEEGHAALKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2lgw_A4e-17669568DnaJ homolog subfamily B member 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1382386KKKRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013902312.10.0putative DnaJ subfamily C member 21
TrEMBLA0A0D2JXE20.0A0A0D2JXE2_9CHLO; Putative DnaJ subfamily C member 21
STRINGA0A087SM561e-100(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP443077
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.12e-51DNAJ heat shock N-terminal domain-containing protein
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]