PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013902384.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family AP2
Protein Properties Length: 253aa    MW: 28478.3 Da    PI: 9.8806
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013902384.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.95.1e-133987154
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                    s+++GV+ + ++grW+++++        k+++lg ++++e+Aa a++ a+ k++
  XP_013902384.1 39 SRFRGVTHHVRTGRWESHVWLE-----GKQVYLGGYDSEEQAALAYDVAAVKFR 87
                    789***************9884.....4**********************9987 PP
2AP240.19.2e-13138190255
             AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GV+++  +grW+A+I   p+++ kr++ +lg f+t+++Aa a+++a+ +++g
  XP_013902384.1 138 AYRGVSRHA-KGRWEARIGLsPVDG-KRRYRYLGLFDTEQQAAVAYDRAAVEIKG 190
                     69****998.7*********87664.48**********99**********99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.26E-173996No hitNo description
PfamPF008477.2E-83987IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-153997IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-154097IPR001471AP2/ERF domain
PROSITE profilePS5103217.0424096IPR001471AP2/ERF domain
SMARTSM003802.8E-2340102IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-15137199IPR016177DNA-binding domain
CDDcd000182.86E-16137200No hitNo description
Gene3DG3DSA:3.30.730.102.1E-15138198IPR001471AP2/ERF domain
PfamPF008479.6E-8138190IPR001471AP2/ERF domain
SMARTSM003802.6E-19138204IPR001471AP2/ERF domain
PROSITE profilePS5103216.779138198IPR001471AP2/ERF domain
PRINTSPR003676.6E-8139150IPR001471AP2/ERF domain
PRINTSPR003676.6E-8180200IPR001471AP2/ERF domain
Gene3DG3DSA:1.10.510.101.4E-4210247No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0032440Molecular Function2-alkenal reductase [NAD(P)] activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MMEMAEVVAS SGGDVGPARR DRAATARRAL EERGGRNTSR FRGVTHHVRT GRWESHVWLE  60
GKQVYLGGYD SEEQAALAYD VAAVKFRASE AQTNFPLAAY QGEMAGRDKV GREELIQFLR  120
RISRSAAPQG TASSASSAYR GVSRHAKGRW EARIGLSPVD GKRRYRYLGL FDTEQQAAVA  180
YDRAAVEIKG LGAIINFPIT HYADLLDNGQ QQQQQQQQQQ QQQQQQQQQQ QQQQQQQQQQ  240
QQQQQQQQQS ASC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013902384.10.0AP2 domain-containing transcription factor
TrEMBLA0A0D2MK731e-179A0A0D2MK73_9CHLO; AP2 domain-containing transcription factor
STRINGXP_002507962.12e-58(Micromonas sp. RCC299)
STRINGA0A090MD561e-58(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP561657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-41AP2 family protein
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]