PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013902725.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family ERF
Protein Properties Length: 820aa    MW: 88849.3 Da    PI: 5.8994
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013902725.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.14.4e-13560609155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s ykGV+w++++ rW A++++      r  +++g+f  +eeAa+a++ a + l g
  XP_013902725.1 560 SVYKGVHWHRRDRRWCARVKHG-----RSDVHVGSFKDEEEAARAYDGAVLHLLG 609
                     78****************8884.....7*******************99888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.25E-5156213IPR016177DNA-binding domain
PROSITE profilePS510329.374157213IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.7E-4158213IPR001471AP2/ERF domain
Gene3DG3DSA:1.10.510.101.2E-5309371No hitNo description
SuperFamilySSF541712.55E-11560620IPR016177DNA-binding domain
PfamPF008474.0E-6560604IPR001471AP2/ERF domain
PROSITE profilePS5103213.38561621IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-10561620IPR001471AP2/ERF domain
SMARTSM003801.7E-4561627IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 820 aa     Download sequence    Send to blast
MTGFLRWCRS HDPRAAAALA AAPPGQRPPE QAAACGREWA AAPELRCGLE ELQQGLEHVL  60
EEDSAEFMRE HMQQLSPALR QLLPRLNAAP GAPSLAEGLW QEAVAVMRGA RLDPAKAVHV  120
VWWAVCRHQM RHGEEQQQRQ RRRSPWGWSR RPRYISAFKG VHWVEASRKW AVKVPAGDRL  180
STIAKFDDEE FAARVFDAAA LLLIGEAGCV NFGAADATVL MGQLQGSQAL RSIVRIEYEL  240
SKAKGGQAEA LTGEAAAMAT AAATLGAPAA GAAAAGVVSG SARGGAATAA ALDASAAVAT  300
DVAGQVSRQN QTTTEQDLSR QRQKQQKLQQ QRRQRQQQQQ QQQQQQQQQQ QQQQQQQQQS  360
SSHEQTHSQQ TGHQEHDVVE NNLDQDHDAG GEQRATKRPR QTFAAAQAPA VEPAPTRQQQ  420
LRQLLLLLQQ QPQQQQHQQH QQHQQHHRQR QQAQQPQQPQ QQQQQQAQQR QQEQQPPEME  480
QQPPPSPPLP SPPPQQQQQQ QQQQDEDSSS DEPNDQMEVG AAEESVEWEE ESVECEEEEE  540
EAEDDGDEEE EEEEEEGRRS VYKGVHWHRR DRRWCARVKH GRSDVHVGSF KDEEEAARAY  600
DGAVLHLLGE GAIAGGKTNF GVEAARPWAA RFAVRQQQRA ATRRRREGGR GRGGGCGERG  660
GGGAAPEVFP AAGEEQMGAR RNKAGLASVT PTLSLAALFK FMATAAPGCF ACAGGDAAGE  720
DSAGSGPRGG AINGGGGCCG DGGGDGDFSG VSGLRSAEDQ RPAAQREGGA APGTRGEQSS  780
TAPSLTPQSP PRTPCYPALL SWQSQPPQAG TAAGARGELS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1647654GGRGRGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013902725.10.0hypothetical protein MNEG_4249
TrEMBLA0A0D2NEX20.0A0A0D2NEX2_9CHLO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP575168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.14e-07AP2 family protein
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]