PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013902907.1

Organism

Monoraphidium neglectum

Taxonomic ID

145388

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium

Family

ERF

Protein Properties

Length: 773aa MW: 76331.5 Da PI: 7.2743

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013902907.1	genome	BU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	24.2	8.3e-08	93	141	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV +g W+A+Ir r +++lg+f + eAa a+++a+ l g XP_013902907.1 93 SSYRGVAATD-NGTWRARIRFG-----RYTVHLGRFREEREAALAYDRAASLLLG 141 679*9777.8*****4.....69*****99*******977665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	3.48E-11	93	150	No hit	No description
SuperFamily	SSF54171	8.5E-13	93	149	IPR016177	DNA-binding domain
SMART	SM00380	7.7E-11	94	155	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	9.4E-13	94	150	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	12.51	94	149	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 773 aa Download sequence Send to blast
MQPVGSWGRG TGSGEAPDEA LARAVAVASA GNAGAGGNAA AAWMQSASGD DGSGGAAALS 60 AAAAAAAAAA AAGAAPAAAA PRGPRHRSSE KTSSYRGVAA TDNGTWRARI RFGRYTVHLG 120 RFREEREAAL AYDRAASLLL GPSAVLNFKE KNKDACAMVH TAIVIQQVLG ADAPEAVARL 180 AGGAAYPGQG GDGGGNGGGG GGGGAKPGVK RAKLETRMAL ASQYNHQRRA EQEQQQQQQE 240 QQQQQQQQQQ QIMQLIEQQQ RAAAAAAAVA AQQQSSAAAA AAAVRGPAGP AAARGGVAHG 300 AALQPLPPLL DVQRRRAEDA LEQELLLQLQ LQHQQLSLLG GAQGAAAAAA AAQAAQQALP 360 RAQRAPGRGD PDADALLDQI LQEYAAMQQH DAWASQPSAR APVAAPGAGA GAAAAAQLQQ 420 LRAAPGPAEG ALQDRVLDAL LHGFEARLLG GAGAAGRGGG GGGGSGLEQL ALEQLMSAVG 480 GAAALAPRQA SGGGGGGAPI ACVSAGGMPV GDVWEQAAAR EAAAAAAVSA AAAVQQQHQQ 540 QQQQQQQHLQ QLLKLEVPHQ QQDLSSQRME AAARPRPTGA AAAAAAAPHG SPAMPQGGAN 600 SSCSGQGRAA ATAGKPGVAG AAGTDGAACP GAAGLLLAAR QARSSGEDDL TTDLDAEQAV 660 MAAAMAQIER LLQSQPELLL ACMRSAAQVA GEPLQQDAAE THAAAVAAVA AVVDQRKRAA 720 GGAGGGAGGA AEAEAAGGAG KRRRGFGGDA DGDTTSLRQQ PRLHENHASG AHV

Sequence ? help Back to Top

Protein Sequence Length: 773 aa Download sequence Send to blast

MQPVGSWGRG TGSGEAPDEA LARAVAVASA GNAGAGGNAA AAWMQSASGD DGSGGAAALS  60
AAAAAAAAAA AAGAAPAAAA PRGPRHRSSE KTSSYRGVAA TDNGTWRARI RFGRYTVHLG  120
RFREEREAAL AYDRAASLLL GPSAVLNFKE KNKDACAMVH TAIVIQQVLG ADAPEAVARL  180
AGGAAYPGQG GDGGGNGGGG GGGGAKPGVK RAKLETRMAL ASQYNHQRRA EQEQQQQQQE  240
QQQQQQQQQQ QIMQLIEQQQ RAAAAAAAVA AQQQSSAAAA AAAVRGPAGP AAARGGVAHG  300
AALQPLPPLL DVQRRRAEDA LEQELLLQLQ LQHQQLSLLG GAQGAAAAAA AAQAAQQALP  360
RAQRAPGRGD PDADALLDQI LQEYAAMQQH DAWASQPSAR APVAAPGAGA GAAAAAQLQQ  420
LRAAPGPAEG ALQDRVLDAL LHGFEARLLG GAGAAGRGGG GGGGSGLEQL ALEQLMSAVG  480
GAAALAPRQA SGGGGGGAPI ACVSAGGMPV GDVWEQAAAR EAAAAAAVSA AAAVQQQHQQ  540
QQQQQQQHLQ QLLKLEVPHQ QQDLSSQRME AAARPRPTGA AAAAAAAPHG SPAMPQGGAN  600
SSCSGQGRAA ATAGKPGVAG AAGTDGAACP GAAGLLLAAR QARSSGEDDL TTDLDAEQAV  660
MAAAMAQIER LLQSQPELLL ACMRSAAQVA GEPLQQDAAE THAAAVAAVA AVVDQRKRAA  720
GGAGGGAGGA AEAEAAGGAG KRRRGFGGDA DGDTTSLRQQ PRLHENHASG AHV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013902907.1	0.0	hypothetical protein MNEG_4071
TrEMBL	A0A0D2JZE1	0.0	A0A0D2JZE1_9CHLO; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68840.2	3e-07	related to ABI3/VP1 2

Link Out ? help Back to Top
Entrez Gene	25736949

Publications ? help Back to Top
Bogen C, et al. Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics, 2013. 14: p. 926 [PMID:24373495]