PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013902908.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family ERF
Protein Properties Length: 568aa    MW: 59365.4 Da    PI: 7.7944
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013902908.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.56.7e-0861109155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV   + +g W+++Ir       + +++lg+f  + eAa a+++a+  l g
  XP_013902908.1  61 SSYRGVALTE-NGYWRSRIRFG-----KHTIHLGRFRDEREAALAYDRAAALLLG 109
                     67*****999.8*********4.....6**********99*********987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.21E-1361117IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.2E-1262117IPR001471AP2/ERF domain
PROSITE profilePS5103211.95762117IPR001471AP2/ERF domain
SMARTSM003805.5E-962123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MASNVSPQSL SGDSRTSEAA PAPVTPASPG TGSEPRGVDS AGPVTEIVIK RRERSKLMKS  60
SSYRGVALTE NGYWRSRIRF GKHTIHLGRF RDEREAALAY DRAAALLLGP SASLNFRFAP  120
GRDDPGPVLH TAIIVNQALG ANTPQAVQDM VNGATWQAAE RERARLAATR APPVPPQQQL  180
PPMIRVDEAA AAFAALQQQQ QQEQQQQLRL KLVQEQVARQ QEQLRQLQAL QAQLQMQRVP  240
EPQLQQLEAG HQGGGASLLL HHALHEAAVL QEQQQQQQQL QLQRWRLQQQ QQQQQQQQRE  300
QQQQQQREQQ RRQQQQAEAD QEMDAAAALA GLLGQAQSPA AAQQLLAALM QASGRGAAAP  360
APAPPAAELP PVAAPGPVKA LAPPAASATP SAEEGAFRAS SPSGGTHASW GGAPAAPVPT  420
PTPAPAHAAV DSEAAARQAA FVAAMEDVGR LLQTEPGLLA DYATPDGSAA DSSDAAAARM  480
AAALAAVVTA AAAVAQDLGG GAAPAAAAAP APTLGKRARD GAAGASPDCE SPTQRRREEP  540
ALGARGALAL EHRLLQLSGV AASLAGRC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013902908.10.0hypothetical protein MNEG_4072
TrEMBLA0A0D2LAS10.0A0A0D2LAS1_9CHLO; Uncharacterized protein
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]