PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

XP_013902922.1

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium

Family

Protein Properties

Length: 123aa MW: 14051.1 Da PI: 11.1479

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013902922.1	genome	BU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.1	9.8e-09	34	62	15	45
HHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 15 avkqlGggtWktIartmgkgRtlkqcksrwq 45 a + + ++ W++Iar + +Rt++ +k++w+ XP_013902922.1 34 AQECYTNR-WAAIARLLE-RRTDNAVKNHWH 62 55557778.*******.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.551	20	65	IPR017877	Myb-like domain
SuperFamily	SSF46689	1.79E-7	33	69	IPR009057	Homeodomain-like
Pfam	PF00249	2.5E-6	33	62	IPR001005	SANT/Myb domain
CDD	cd00167	9.40E-5	35	65	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.5E-9	36	73	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 123 aa Download sequence Send to blast
MPASEGAGHQ VMDGGREAFW WIEIRQKLPL AAQAQECYTN RWAAIARLLE RRTDNAVKNH 60 WHATLKRKAL AGTLQNRFIE QGATLEWLLA NREPEGVRDT AAAAVRRSHK VRVWRRLCAQ 120 ALL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013902922.1	6e-85	hypothetical protein MNEG_4057
TrEMBL	A0A0D2JZG0	1e-83	A0A0D2JZG0_9CHLO; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50060.1	4e-12	myb domain protein 77

Link Out ? help Back to Top
Entrez Gene	25736935

Publications ? help Back to Top
Bogen C, et al. Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics, 2013. 14: p. 926 [PMID:24373495]