PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013903151.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family ERF
Protein Properties Length: 202aa    MW: 21651.8 Da    PI: 5.1732
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013903151.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.42.8e-11655155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    sg +GV+wd k+ rW+++I        ++++  g+f+t eeA +a++    +l+g
  XP_013903151.1  6 SGLRGVFWDAKTLRWRSQIGFR-----TRKVFNGYFDTVEEAGRAYDMKYFELHG 55
                    789***************9993.....466666******************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.86E-10669IPR016177DNA-binding domain
PfamPF008471.1E-5752IPR001471AP2/ERF domain
PROSITE profilePS5103212.009768IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-61669IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MGEKKSGLRG VFWDAKTLRW RSQIGFRTRK VFNGYFDTVE EAGRAYDMKY FELHGDDARA  60
AAGKTNFPVE DYCPDLHTAA GRPVPPEVSA RAAEICAARA RREADAAAAV AAAAAGGASD  120
EEGEQGGEPQ QESLGAEAME ASEQLAVRRS KRRAAQSNLL VHLGEDFVYD GPDSSGDMQD  180
EPGSGSKGRP APRWRSSAAT PC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013903151.11e-146hypothetical protein MNEG_3832
TrEMBLA0A0D2MUE41e-144A0A0D2MUE4_9CHLO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP3683512
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]