PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

XP_013903230.1

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium

Family

Protein Properties

Length: 86aa MW: 9800.21 Da PI: 7.2552

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013903230.1	genome	BU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	136	1.1e-42	1	80	17	96
NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 mkkvlPanaki+kdake +qec sefisf+tseas kcq+ekrktingddllwa+ tl fedyv+pl++yl+kyre+e+ XP_013903230.1 1 MKKVLPANAKIAKDAKEAIQECTSEFISFITSEASAKCQAEKRKTINGDDLLWAMETLQFEDYVAPLRLYLSKYREAEAS 80 9***************************************************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.1E-41	1	85	IPR009072	Histone-fold
SuperFamily	SSF47113	1.09E-31	1	85	IPR009072	Histone-fold
Pfam	PF00808	2.2E-20	1	55	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	6.0E-19	19	37	No hit	No description
PRINTS	PR00615	6.0E-19	38	56	No hit	No description
PRINTS	PR00615	6.0E-19	57	75	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 86 aa Download sequence Send to blast
MKKVLPANAK IAKDAKEAIQ ECTSEFISFI TSEASAKCQA EKRKTINGDD LLWAMETLQF 60 EDYVAPLRLY LSKYREAEAS TQKHKE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_B	2e-34	1	76	19	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	2e-34	1	76	19	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013903230.1	2e-57	Nuclear transcription factor Y subunit B
Swissprot	O23310	1e-42	NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBL	A0A0D2NGS2	4e-56	A0A0D2NGS2_9CHLO; Nuclear transcription factor Y subunit B
STRING	Gorai.002G250600.1	5e-42	(Gossypium raimondii)
STRING	PP1S25_89V6.1	5e-42	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP2023	16	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	6e-45	nuclear factor Y, subunit B3

Link Out ? help Back to Top
Entrez Gene	25736631

Publications ? help Back to Top
Han X, et al. Overexpression of the poplar NF-YB7 transcription factor confers drought tolerance and improves water-use efficiency in Arabidopsis. J. Exp. Bot., 2013. 64(14): p. 4589-601 [PMID:24006421] Bogen C, et al. Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics, 2013. 14: p. 926 [PMID:24373495] Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Hossain MA, et al. Identification of Novel Components of the Unfolded Protein Response in Arabidopsis. Front Plant Sci, 2016. 7: p. 650 [PMID:27242851] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]