PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013903335.1

Organism

Monoraphidium neglectum

Taxonomic ID

145388

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium

Family

bZIP

Protein Properties

Length: 342aa MW: 35127 Da PI: 4.7471

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013903335.1	genome	BU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	19.8	1.7e-06	112	155	3	46
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 ++++++ + NR+A++r+R+RKka+ L+ v+eL+++ ++L XP_013903335.1 112 RVRNAKQQELNRLAQQRYRERKKAKYSVLQGTVEELSEQLERLS 155 6778899999*****************************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	4.2E-4	115	155	No hit	No description
CDD	cd14686	4.92E-5	119	156	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MDANAPWSSM DLDFDLNSVP VNLDGAVPDG LPPDDLADAW LSDFVLPRTG SPGFDPSGSA 60 PAPSRNNGTT TAADDDSDLS DSDTDDEGGD GARRRQGGGG SGGAKKAKRR RRVRNAKQQE 120 LNRLAQQRYR ERKKAKYSVL QGTVEELSEQ LERLSALESG AAAMAARTAE LEALAGEQAR 180 RLEESGASLT RQQEQLRLAA EAISEQQRQL RERDARVAEL EGRLGGLQRQ AAAAVSAASA 240 MSGGAAAVPA GAGGANAEAL AAAVRAILGG LILPAAAAAA SGAEMSAAAA AAAATAAAPA 300 QLPLPDAVLQ QIHSCCAEVA LQLRTLRAVQ AEAPHAIQVP CC

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MDANAPWSSM DLDFDLNSVP VNLDGAVPDG LPPDDLADAW LSDFVLPRTG SPGFDPSGSA  60
PAPSRNNGTT TAADDDSDLS DSDTDDEGGD GARRRQGGGG SGGAKKAKRR RRVRNAKQQE  120
LNRLAQQRYR ERKKAKYSVL QGTVEELSEQ LERLSALESG AAAMAARTAE LEALAGEQAR  180
RLEESGASLT RQQEQLRLAA EAISEQQRQL RERDARVAEL EGRLGGLQRQ AAAAVSAASA  240
MSGGAAAVPA GAGGANAEAL AAAVRAILGG LILPAAAAAA SGAEMSAAAA AAAATAAAPA  300
QLPLPDAVLQ QIHSCCAEVA LQLRTLRAVQ AEAPHAIQVP CC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	92	111	RRRQGGGGSGGAKKAKRRRR
2	107	112	KRRRRV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013903335.1	0.0	hypothetical protein MNEG_3642
TrEMBL	A0A0D2NH11	0.0	A0A0D2NH11_9CHLO; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP10396	4	4

Link Out ? help Back to Top
Entrez Gene	25736520

Publications ? help Back to Top
Bogen C, et al. Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics, 2013. 14: p. 926 [PMID:24373495]