PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013904757.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family B3
Protein Properties Length: 251aa    MW: 27014.5 Da    PI: 9.6091
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013904757.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.96.7e-1725117190
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f+k+lt+sdv++sgr+v+pk  ae++  +++++ ++ l +ed +g++++++ ++  +++s++y+l+ G+ +  +  +Lk gD+++F  +g++++
  XP_013904757.1  25 FEKQLTSSDVSASGRVVVPKAMAEQYfpKLDNPAGISLEVEDAHGETYTLRWRFwiNNQSRMYLLE-GTADLQHRYHLKMGDVLIFAQKGDKDK 117
                     99**************************88888999*********999999988656666667776.********************8877554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.9E-2622125IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.19E-2023119IPR015300DNA-binding pseudobarrel domain
CDDcd100174.47E-2024121No hitNo description
SMARTSM010196.8E-1425127IPR003340B3 DNA binding domain
PfamPF023621.7E-1325117IPR003340B3 DNA binding domain
PROSITE profilePS508638.92425125IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MAAEAEAQAA AVLEQLQRVG AKVFFEKQLT SSDVSASGRV VVPKAMAEQY FPKLDNPAGI  60
SLEVEDAHGE TYTLRWRFWI NNQSRMYLLE GTADLQHRYH LKMGDVLIFA QKGDKDKAVV  120
LAGRPATRAD AMRKAAAAAR KPSPTPAGGG GGKGGAGRNK DKAIKERNRR AAMRRHGVNP  180
EDVEPPADGV FRAVPSDSMA DAPNAVSQVR AGRWLASLNL AGELYQAFFP NEDQAAEAIL  240
LSGFTQPDVS A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A4e-222413323131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157169RNKDKAIKERNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013904757.10.0hypothetical protein MNEG_2226
TrEMBLA0A0D2K5W50.0A0A0D2K5W5_9CHLO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP41131011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-20HSI2-like 1
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]