PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013904976.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family ERF
Protein Properties Length: 627aa    MW: 67467.2 Da    PI: 8.1148
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013904976.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP225.63.1e-0893139153
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                     s+++GV   + +g W+++Ir       +++++lg+f  + +Aa a+++a+  l
  XP_013904976.1  93 SQFRGVASTE-NGLWRCRIRFG-----KQTVHLGRFNNERDAALAYDRAASML 139
                     689***8666.8*********4.....6**********99*********9766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-1393150IPR016177DNA-binding domain
PROSITE profilePS5103211.94394149IPR001471AP2/ERF domain
SMARTSM003802.0E-894155IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-1394149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MLAGLTTGNT PPWAVLLPAP SLATAAPAVS TAVTSDAEQQ ARQQQHQPQD QQQDQQQQQA  60
QQQQGWWGLP RQQGQAKRAR PSPRQGNKRC KTSQFRGVAS TENGLWRCRI RFGKQTVHLG  120
RFNNERDAAL AYDRAASMLL GDSAKLNFEA RPPEDDEACA AAATAMAICQ GQQAAAFPVL  180
QQPVEQQYRL TLETRLQGST PHRRRPQDQV QEHEQGGVGA EHGLLLEQEQ EWAQLGAALG  240
AAVLAFTQPP PEGDAPAAHV AAGAEQAWGA AGQEREHEQQ RQRQQEQEWQ DLPSAHEEGD  300
PQDMRRRGRV NGEDEEEDEV EQRQPAPPSK QSVVQQRWQQ EQQEQEQERQ QQQQQSVLAP  360
ARRGGFLPQP AAGGVAALAS GNAQANYQWP NGVLAGQAWL GGTPPHPHLL AGRRELPGLD  420
RRPESQALNH HSVRGSRRGR AEAASSLHVR GSSGGSGGSS SSGGRSDGGG GSSGDGGSDE  480
EGSWDFSAAA AAQQCRGSAE YAAAIEQLGQ LLEADPQLML WSLMHASRKD APPRRASRRA  540
QRMWSLRAEQ RAAAVAAVSA LVAANARHRA VPGRGSDRGG GGSGGGSAGR RRRRSKQASK  600
QGAQLALPLA MFDVTLCVTA TCLYFMS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1462470GGRSDGGGG
2588596GRRRRRSKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013904976.10.0hypothetical protein MNEG_1998
TrEMBLA0A0D2N0720.0A0A0D2N072_9CHLO; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G36060.11e-08ERF family protein
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]