PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013905585.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family E2F/DP
Protein Properties Length: 165aa    MW: 18719 Da    PI: 7.6082
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013905585.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP64.51.5e-202661566
         E2F_TDP 15 klleksee.givtlnevakeLvse............dvknkrRRiYDilNVLealnliekkekne 66
                    +++ek+e+ g++t+neva+eLv+e            d+kn+rRR+YD+lNVL al++i+k +k +
  XP_013905585.1  2 RMCEKVESkGTTTYNEVADELVAEmkgavledgttyDEKNIRRRVYDALNVLLALDVISKDKKAK 66
                    69***9999***************************************************76654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.9E-28165IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.9E-13164IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.2E-11171IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.6E-17265IPR003316E2F/DP family, winged-helix DNA-binding domain
SMARTSM011380.008332116IPR014889Transcription factor DP, C-terminal
PfamPF087811.5E-865128IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440742.88E-1065114No hitNo description
Gene3DG3DSA:2.60.120.101.5E-5121147IPR014710RmlC-like jelly roll fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MRMCEKVESK GTTTYNEVAD ELVAEMKGAV LEDGTTYDEK NIRRRVYDAL NVLLALDVIS  60
KDKKAKADAT VEVHISDDMR EVQFEFGARP FRIHDDGDVL RLMTAAQGVG KGTRQHVPTV  120
RPQQQQQQQQ QQQQQQQQQQ QQQQQQVLRA QARGPPPPGQ QLPKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-231641782PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013905585.11e-116transcription factor Dp-1
TrEMBLA0A0D2NQG31e-115A0A0D2NQG3_9CHLO; Transcription factor Dp-1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP15991417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-25Transcription factor DP
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]